Mercurial > repos > recetox > october_recetox_xmsannotator_advanced
comparison october_recetox_xmsannotator_advanced.xml @ 15:e72157bd26db draft
"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox-xmsannotator commit 15e73de637812183d2853918a63f41c0bebfb507"
| author | recetox |
|---|---|
| date | Wed, 03 Nov 2021 18:24:53 +0000 |
| parents | 51f8e69c9d47 |
| children | 252a6dc07df5 |
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| 14:51f8e69c9d47 | 15:e72157bd26db |
|---|---|
| 13 <configfile name="wrapper"><![CDATA[ | 13 <configfile name="wrapper"><![CDATA[ |
| 14 library(recetox.xmsannotator) | 14 library(recetox.xmsannotator) |
| 15 | 15 |
| 16 peak_table = arrow::read_parquet("${peak_table}") | 16 peak_table = arrow::read_parquet("${peak_table}") |
| 17 if("peak" %in% colnames(peak_table)) { | 17 if("peak" %in% colnames(peak_table)) { |
| 18 if(!is.integer(peak_table$peak)) { | 18 if(!is.integer(peak_table\$peak)) { |
| 19 peak_table$peak <- as.integer(peak_table$peak) | 19 peak_table\$peak <- as.integer(peak_table\$peak) |
| 20 } | 20 } |
| 21 } | 21 } |
| 22 | 22 |
| 23 annotation <- advanced_annotation( | 23 annotation <- advanced_annotation( |
| 24 peak_table = peak_table, | 24 peak_table = peak_table, |