Mercurial > repos > recetox > october_recetox_xmsannotator_advanced

comparison october_recetox_xmsannotator_advanced.xml @ 13:29b04e82bc4e draft

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"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox-xmsannotator commit 42e346be32aa2c3f33fb2693bfc3675b1cf57397"
author recetox
date Wed, 03 Nov 2021 12:35:35 +0000
parents c1f439401578
children 51f8e69c9d47
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12:c1f439401578 13:29b04e82bc4e
1 <tool id="october_recetox_xmsannotator_advanced" name="OCTOBER RECETOX xMSannotator advanced" version="@TOOL_VERSION@+galaxy2"> 1 <tool id="october_recetox_xmsannotator_advanced" name="OCTOBER RECETOX xMSannotator advanced" version="@TOOL_VERSION@+galaxy3">
2 <description>annotate peak intensity table including scores and confidence levels</description> 2 <description>annotate peak intensity table including scores and confidence levels</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="creator"/> 6 <expand macro="creator"/>
32 mass_defect_tolerance = as.double($mass_defect_tolerance), 32 mass_defect_tolerance = as.double($mass_defect_tolerance),
33 mass_defect_precision = as.double($mass_defect_precision), 33 mass_defect_precision = as.double($mass_defect_precision),
34 peak_rt_width = as.integer($peak_rt_width), 34 peak_rt_width = as.integer($peak_rt_width),
35 maximum_isotopes = as.integer($maximum_isotopes), 35 maximum_isotopes = as.integer($maximum_isotopes),
36 min_ions_per_chemical = as.integer($min_ions_per_chemical), 36 min_ions_per_chemical = as.integer($min_ions_per_chemical),
37 filter_by = "$filter_by" 37 filter_by = $filter_by
38 ) 38 )
39 save_parquet(data = annotation, file = "${annotation_parquet}") 39 save_parquet(data = annotation, file = "${annotation_parquet}")
40 ]]></configfile> 40 ]]></configfile>
41 </configfiles> 41 </configfiles>
42 42