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comparison schemas/mzML1.1.1_idx.xsd @ 0:5961146e0d1a draft default tip

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
author recetox
date Fri, 20 Jan 2023 12:41:59 +0000
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-1:000000000000 0:5961146e0d1a
1 <?xml version="1.0" encoding="utf-8"?>
2 <!-- Created with Liquid XML Studio 1.0.8.0 (http://www.liquid-technologies.com) -->
3 <xs:schema xmlns:dx="http://psi.hupo.org/ms/mzml"
4 xmlns:xs="http://www.w3.org/2001/XMLSchema"
5 targetNamespace="http://psi.hupo.org/ms/mzml"
6 attributeFormDefault="unqualified"
7 elementFormDefault="qualified"
8 version="1.1.1">
9 <xs:include schemaLocation="mzML1.1.0.xsd" />
10 <xs:complexType name="IndexListType">
11 <xs:sequence>
12 <xs:element minOccurs="1" maxOccurs="unbounded" name="index" type="dx:IndexType">
13 <xs:annotation>
14 <xs:documentation>Index element containing one or more offsets for random data access for the entity described in the 'name' attribute.</xs:documentation>
15 </xs:annotation>
16 </xs:element>
17 </xs:sequence>
18 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
19 <xs:annotation>
20 <xs:documentation>Number of indices in this list.</xs:documentation>
21 </xs:annotation>
22 </xs:attribute>
23 </xs:complexType>
24 <xs:complexType name="IndexType">
25 <xs:sequence>
26 <xs:element maxOccurs="unbounded" name="offset" type="dx:OffsetType">
27 <xs:annotation>
28 <xs:documentation>File pointer offset (in bytes) of the element identified by the 'id' attribute.</xs:documentation>
29 </xs:annotation>
30 </xs:element>
31 </xs:sequence>
32 <xs:attribute name="name" use="required">
33 <xs:annotation>
34 <xs:documentation>The name of the entity the index entries are pointing to.</xs:documentation>
35 </xs:annotation>
36 <xs:simpleType>
37 <xs:restriction base="xs:string">
38 <xs:enumeration value="spectrum" />
39 <xs:enumeration value="chromatogram" />
40 </xs:restriction>
41 </xs:simpleType>
42 </xs:attribute>
43 </xs:complexType>
44 <xs:complexType name="OffsetType">
45 <xs:simpleContent>
46 <xs:extension base="xs:long">
47 <xs:attribute name="idRef" type="xs:string" use="required">
48 <xs:annotation>
49 <xs:documentation>Reference to the 'id' attribute of the indexed element.</xs:documentation>
50 </xs:annotation>
51 </xs:attribute>
52 <xs:attribute name="spotID" type="xs:string" use="optional">
53 <xs:annotation>
54 <xs:documentation>The identifier for the spot from which this spectrum was derived, if a MALDI or similar run.</xs:documentation>
55 </xs:annotation>
56 </xs:attribute>
57 <xs:attribute name="scanTime" type="xs:double" use="optional">
58 <xs:annotation>
59 <xs:documentation>In the case of a spectrum representing a single scan, this attribute may be used to reference it by the time at which the scan was acquired (a.k.a. scan time or retention time).</xs:documentation>
60 </xs:annotation>
61 </xs:attribute>
62 </xs:extension>
63 </xs:simpleContent>
64 </xs:complexType>
65 <xs:element name="indexedmzML">
66 <xs:annotation>
67 <xs:documentation>Container element for mzML which allows the addition of an index.</xs:documentation>
68 </xs:annotation>
69 <xs:complexType>
70 <xs:sequence>
71 <xs:element ref="dx:mzML" />
72 <xs:element minOccurs="1" name="indexList" type="dx:IndexListType">
73 <xs:annotation>
74 <xs:documentation>List of indices.</xs:documentation>
75 </xs:annotation>
76 </xs:element>
77 <xs:element name="indexListOffset" nillable="true" type="xs:long">
78 <xs:annotation>
79 <xs:documentation>File pointer offset (in bytes) of the 'indexList' element.</xs:documentation>
80 </xs:annotation>
81 </xs:element>
82 <xs:element name="fileChecksum" type="xs:string">
83 <xs:annotation>
84 <xs:documentation>SHA-1 checksum from beginning of file to end of 'fileChecksum' open tag.</xs:documentation>
85 </xs:annotation>
86 </xs:element>
87 </xs:sequence>
88 </xs:complexType>
89 <xs:key name="KEY_ID_IDX">
90 <xs:selector xpath=".//dx:indexedmzML/dx:mzML/dx:run/dx:spectrumList/dx:spectrum | .//dx:indexedmzML/dx:mzML/dx:run/dx:chromatogramList/dx:chromatogram" />
91 <xs:field xpath="@id" />
92 </xs:key>
93 <xs:keyref name="FKNID" refer="dx:KEY_ID_IDX">
94 <xs:selector xpath=".//dx:indexedmzML/dx:indexList/dx:index/dx:offset" />
95 <xs:field xpath="@id" />
96 </xs:keyref>
97 </xs:element>
98 </xs:schema>