Mercurial > repos > recetox > msmetaenhancer

diff msmetaenhancer_wrapper.py @ 2:4ae5b466a805 draft

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"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/msmetaenhancer commit f09a5b3ee451d78dc025baee5eccb099f71be2b4"
author recetox
date Tue, 15 Feb 2022 12:26:04 +0000
parents 053ce79ed564
children b48c57453a25
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line diff
--- a/msmetaenhancer_wrapper.py	Fri Jan 28 16:23:58 2022 +0000
+++ b/msmetaenhancer_wrapper.py	Tue Feb 15 12:26:04 2022 +0000
@@ -11,9 +11,10 @@
     parser.add_argument("--input_file", type=str, help="Path to query spectra file in MSP format.")
     parser.add_argument("--output_file", type=str, help="Path to output spectra file.")
     parser.add_argument("--jobs", type=str, help="Sequence of conversion jobs to be used.")
+    parser.add_argument("--log_file", type=str, help="Path to log with details of the annotation process.")
     args = parser.parse_args()
 
-    app = Application()
+    app = Application(log_file=args.log_file)
 
     # import .msp file
     app.load_spectra(args.input_file, file_format='msp')