Mercurial > repos > recetox > msmetaenhancer

comparison msmetaenhancer.xml @ 2:4ae5b466a805 draft

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"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/msmetaenhancer commit f09a5b3ee451d78dc025baee5eccb099f71be2b4"
author recetox
date Tue, 15 Feb 2022 12:26:04 +0000
parents 4c328e0e59ab
children b48c57453a25
comparison
equal deleted inserted replaced
1:4c328e0e59ab 2:4ae5b466a805
17 <configfiles> 17 <configfiles>
18 <configfile name="msmetaenhancer_python_cli"> 18 <configfile name="msmetaenhancer_python_cli">
19 python3 ${__tool_directory__}/msmetaenhancer_wrapper.py \ 19 python3 ${__tool_directory__}/msmetaenhancer_wrapper.py \
20 --input_file "$input_file" \ 20 --input_file "$input_file" \
21 --output_file "$output_file" \ 21 --output_file "$output_file" \
22 #if $options.output_log:
23 --log_file "$log_file"\
24 #end if
22 #if len($ordered_jobs) != 0: 25 #if len($ordered_jobs) != 0:
23 #set ordered_jobs = ",".join([str($job.ordered_jobs_select) for $job in $ordered_jobs]) + "," 26 #set ordered_jobs = ",".join([str($job.ordered_jobs_select) for $job in $ordered_jobs]) + ","
24 #else: 27 #else:
25 #set ordered_jobs = "" 28 #set ordered_jobs = ""
26 #end if 29 #end if
44 </repeat> 47 </repeat>
45 48
46 <param name="jobs" type="select" label="Other conversions" multiple="true" optional="true"> 49 <param name="jobs" type="select" label="Other conversions" multiple="true" optional="true">
47 <expand macro="job_options" /> 50 <expand macro="job_options" />
48 </param> 51 </param>
52
53 <section name="options" title="Options">
54 <param label="Save the log file" name="output_log" type="boolean" truevalue="TRUE" falsevalue="FALSE"
55 checked="false" help="Preserve a log with details about the annotation process."/>
56 </section>
49 </inputs> 57 </inputs>
50 58
51 <outputs> 59 <outputs>
52 <data label="MSMetaEnhancer on ${on_string}" name="output_file" format="msp" /> 60 <data label="MSMetaEnhancer on ${on_string}" name="output_file" format="msp" />
61 <data label="Log of MSMetaEnhancer on ${on_string}" name="log_file" format="txt">
62 <filter>options['output_log']</filter>
63 </data>
53 </outputs> 64 </outputs>
54 65
55 <tests> 66 <tests>
56 <test> 67 <test>
57 <param name="input_file" value="sample.msp" ftype="msp" /> 68 <param name="input_file" value="sample.msp" ftype="msp" />