Mercurial > repos > rdvelazquez > rdv_fasta_tools

comparison addFileNameToFastaIDs.xml @ 0:146ffed44f3f draft default tip

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author rdvelazquez
date Wed, 20 Mar 2019 22:17:40 -0400
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-1:000000000000 0:146ffed44f3f
1 <?xml version="1.0"?>
2 <tool id="addFileNameToFastaIDs" version="1.0.0" name="addFileNameToFastaIDs">
3 <description>add the fasta filename to all sequence ids in the
4 file</description>
5 <stdio>
6 <exit_code range="1:"/>
7 </stdio>
8 <version_command/>
9 <command><![CDATA[
10 $__tool_directory__/addFileNameToFastaIDs '$input_fasta' '$input_fasta.display_name' '$modified_fasta'
11 ]]></command>
12 <inputs>
13 <param name="input_fasta" label="Input FASTA" type="data" format="fasta"/>
14 </inputs>
15 <outputs>
16 <data format="fasta" name="modified_fasta"/>
17 </outputs>
18 </tool>