Mercurial > repos > rdvelazquez > rdv_fasta_tools

comparison filterFasta.xml @ 0:146ffed44f3f draft default tip

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author rdvelazquez
date Wed, 20 Mar 2019 22:17:40 -0400
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-1:000000000000 0:146ffed44f3f
1 <?xml version="1.0"?>
2 <tool id="filterFastaOnNumNonGapChars" version="1.0.0" name="filterFastaOnNumNonGapChars">
3 <description>Remove sequences from a fasta file if less than n
4 non-gap characters</description>
5 <stdio>
6 <exit_code range="1:"/>
7 </stdio>
8 <version_command/>
9 <command><![CDATA[
10 $__tool_directory__/filterFasta '$input_fasta' '$minimum_number_of_characters' '$filtered_fasta'
11 ]]></command>
12 <inputs>
13 <param name="input_fasta" label="Input FASTA" type="data" format="fasta"/>
14 <param label="min_num_chars" name="minimum_number_of_characters" type="integer" value="30"/>
15 </inputs>
16 <outputs>
17 <data format="fasta" name="filtered_fasta"/>
18 </outputs>
19 </tool>