Mercurial > repos > rdvelazquez > mmvc

comparison extract_mmvc_consensus @ 3:4ca91bf87f1f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmvc/ commit b'35710f754cc8be97c423c95eb91197df01d0520d\n'-dirty
author rdvelazquez
date Wed, 20 Mar 2019 15:58:26 -0400
parents c5c1faa433e4
children
comparison
equal deleted inserted replaced
2:12e4a2e84931 3:4ca91bf87f1f
9 fastaFilePath = sys.argv[3] 9 fastaFilePath = sys.argv[3]
10 10
11 with open(mmvcOutput) as f: 11 with open(mmvcOutput) as f:
12 data = json.load(f) 12 data = json.load(f)
13 consensus = data["consensus"] 13 consensus = data["consensus"]
14 consensusFasta = ">" + fastaHeaderName + "\n" + consensus 14 consensusFasta = ">" + fastaHeaderName + "\n" + consensus + "\n"
15 f = open(fastaFilePath, "w") 15 f = open(fastaFilePath, "w")
16 f.write(consensusFasta) 16 f.write(consensusFasta)