Mercurial > repos > rdvelazquez > hyphy_meme

comparison macros.xml @ 0:1fe6d55b5a9b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'6da8a2296bb256e47852690cf2221a7c943d8adc\n'-dirty
author rdvelazquez
date Tue, 04 Dec 2018 10:45:43 -0500
parents
children cffd8bd6e3ec
comparison
equal deleted inserted replaced
-1:000000000000 0:1fe6d55b5a9b
1 <?xml version="1.0"?>
2 <macros>
3 <xml name="citations">
4 <citations>
5 <citation type="doi">10.1093/bioinformatics/bti079</citation>
6 <yield/>
7 </citations>
8 </xml>
9 <token name="@VERSION@">2.3.14</token>
10 <xml name="requirements">
11 <requirements>
12 <requirement type="package" version="@VERSION@">
13 hyphy</requirement>
14 <yield/>
15 </requirements>
16 </xml>
17 <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
18 export HYPHY_PATH=`dirname \$HYPHY` &&
19 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
20 cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]></token>
21 <token name="@HYPHYMPI_INVOCATION@"><![CDATA[export HYPHYMPI=`which HYPHYMPI` &&
22 export HYPHYMPI_PATH=`dirname \$HYPHYMPI` &&
23 export HYPHYMPI_LIB=`readlink -f \$HYPHYMPI_PATH/../lib/hyphy` &&
24 cat tool_params | mpirun -np \${GALAXY_SLOTS:-1} HYPHYMPI LIBPATH=\$HYPHYMPI_LIB ]]></token>
25 </macros>