Mercurial > repos > rdvelazquez > hyphy_gard

diff macros.xml @ 0:e489b7f00db7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'6da8a2296bb256e47852690cf2221a7c943d8adc\n'-dirty
author rdvelazquez
date Tue, 04 Dec 2018 10:45:05 -0500
parents
children 9e533457ebc0
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Tue Dec 04 10:45:05 2018 -0500
@@ -0,0 +1,25 @@
+<?xml version="1.0"?>
+<macros>
+  <xml name="citations">
+    <citations>
+      <citation type="doi">10.1093/bioinformatics/bti079</citation>
+      <yield/>
+    </citations>
+  </xml>
+  <token name="@VERSION@">2.3.14</token>
+  <xml name="requirements">
+    <requirements>
+      <requirement type="package" version="@VERSION@">
+      hyphy</requirement>
+      <yield/>
+    </requirements>
+  </xml>
+  <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
+export HYPHY_PATH=`dirname \$HYPHY` &&
+export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
+cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]></token>
+  <token name="@HYPHYMPI_INVOCATION@"><![CDATA[export HYPHYMPI=`which HYPHYMPI` &&
+export HYPHYMPI_PATH=`dirname \$HYPHYMPI` &&
+export HYPHYMPI_LIB=`readlink -f \$HYPHYMPI_PATH/../lib/hyphy` &&
+cat tool_params | mpirun -np \${GALAXY_SLOTS:-1} HYPHYMPI LIBPATH=\$HYPHYMPI_LIB ]]></token>
+</macros>