Mercurial > repos > rdvelazquez > hyphy_gard

comparison hyphy_gard.xml @ 3:107a4340acb0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'6e7f074d80e0f35516e223b76e73f019ad45dd74\n'-dirty
author rdvelazquez
date Fri, 15 Mar 2019 12:48:29 -0400
parents 9e533457ebc0
children 876a69d2c6d7
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2:9e533457ebc0 3:107a4340acb0
2 <tool id="hyphy_gard" name="HyPhy-GARD" version="@VERSION@+galaxy0"> 2 <tool id="hyphy_gard" name="HyPhy-GARD" version="@VERSION@+galaxy0">
3 <description>: Recombination Detection</description> 3 <description>: Recombination Detection</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"> 7 <requirements>
8 <requirement type="package" version="1.0.4">translate-gard</requirement> 8 <requirement type="package" version="2.0.4">translate-gard</requirement>
9 </expand> 9 <requirement type="package" version="2.3.11">hyphy</requirement>
10 </requirements>
10 <version_command>HYPHYMP --version | tail -n 1 | awk '{print $1}'</version_command> 11 <version_command>HYPHYMP --version | tail -n 1 | awk '{print $1}'</version_command>
11 <command detect_errors="exit_code"><![CDATA[ 12 <command detect_errors="exit_code"><![CDATA[
12 export MPI_NODE_COUNT=\${GALAXY_SLOTS:-2} && 13 export MPI_NODE_COUNT=\${GALAXY_SLOTS:-2} &&
13 ln -s '$input_file' gard_input.fa && 14 ln -s '$input_file' gard_input.fa &&
14 echo `pwd`/gard_input.fa > tool_params && 15 echo `pwd`/gard_input.fa > tool_params &&