Mercurial > repos > rdvelazquez > hivclustering
diff test-data/hivclustering-out1.json @ 2:9dc36a1975e8 draft
planemo upload for repository https://github.com/veg/hivclustering/ commit b'a6d09759f16c40d4607d30f4bb28772e74c07021\n'-dirty
| author | rdvelazquez |
|---|---|
| date | Thu, 19 Apr 2018 14:39:39 -0400 |
| parents | d975f8166fc8 |
| children |
line wrap: on
line diff
--- a/test-data/hivclustering-out1.json Mon Mar 05 10:57:10 2018 -0500 +++ b/test-data/hivclustering-out1.json Thu Apr 19 14:39:39 2018 -0400 @@ -1,206 +1,206 @@ -{ - "Cluster sizes": [ - 4, - 3 - ], - "Degrees": { - "Distribution": [ - 2, - 3, - 2 - ], - "Model": "Waring", - "fitted": [ - 0.5000721527871422, - 0.24996196530120798, - 0.12496295268484243 - ], - "rho": 3287.8967604237114, - "rho CI": [ - 698.4419473417928, - 10000.0 - ] - }, - "Directed Edges": { - "Count": 0, - "Reasons for unresolved directions": { - "Missing dates": 7 - } - }, - "Edges": [ - { - "attributes": [ - "BULK" - ], - "directed": false, - "length": 0.045156, - "removed": false, - "sequences": [ - "B_FR_83_HXB2_ACC_K03455_5", - "B_US_83_RF_ACC_M17451" - ], - "source": 2, - "support": 0.0, - "target": 3 - }, - { - "attributes": [ - "BULK" - ], - "directed": false, - "length": 0.0296218, - "removed": false, - "sequences": [ - "B_FR_83_HXB2_ACC_K03455_5", - "B_US_86_JRFL_ACC_U63632" - ], - "source": 2, - "support": 0.0, - "target": 0 - }, - { - "attributes": [ - "BULK" - ], - "directed": false, - "length": 0.0327566, - "removed": false, - "sequences": [ - "B_FR_83_HXB2_ACC_K03455_5", - "B_US_90_WEAU160_ACC_U21135" - ], - "source": 2, - "support": 0.0, - "target": 1 - }, - { - "attributes": [ - "BULK" - ], - "directed": false, - "length": 0.048328, - "removed": false, - "sequences": [ - "B_US_83_RF_ACC_M17451", - "B_US_86_JRFL_ACC_U63632" - ], - "source": 3, - "support": 0.0, - "target": 0 - }, - { - "attributes": [ - "BULK" - ], - "directed": false, - "length": 0.0408994, - "removed": false, - "sequences": [ - "B_US_86_JRFL_ACC_U63632", - "B_US_90_WEAU160_ACC_U21135" - ], - "source": 0, - "support": 0.0, - "target": 1 - }, - { - "attributes": [ - "BULK" - ], - "directed": false, - "length": 0.0287246, - "removed": false, - "sequences": [ - "D_CD_83_ELI_ACC_K03454_7", - "D_CD_83_NDK_ACC_M27323" - ], - "source": 6, - "support": 0.0, - "target": 4 - }, - { - "attributes": [ - "BULK" - ], - "directed": false, - "length": 0.0491974, - "removed": false, - "sequences": [ - "D_CD_83_NDK_ACC_M27323", - "D_CD_84_84ZR085_ACC_U88822" - ], - "source": 4, - "support": 0.0, - "target": 5 - } - ], - "HIV Stages": { - "Unknown": 7 - }, - "Multiple sequences": { - "Followup, days": null, - "Subjects with": 0 - }, - "Network Summary": { - "Clusters": 2, - "Edges": 7, - "Nodes": 7, - "Sequences used to make links": 7 - }, - "Nodes": [ - { - "attributes": [], - "baseline": null, - "cluster": 1, - "edi": null, - "id": "B_FR_83_HXB2_ACC_K03455_5" - }, - { - "attributes": [], - "baseline": null, - "cluster": 1, - "edi": null, - "id": "B_US_83_RF_ACC_M17451" - }, - { - "attributes": [], - "baseline": null, - "cluster": 1, - "edi": null, - "id": "B_US_86_JRFL_ACC_U63632" - }, - { - "attributes": [], - "baseline": null, - "cluster": 1, - "edi": null, - "id": "B_US_90_WEAU160_ACC_U21135" - }, - { - "attributes": [], - "baseline": null, - "cluster": 2, - "edi": null, - "id": "D_CD_83_ELI_ACC_K03454_7" - }, - { - "attributes": [], - "baseline": null, - "cluster": 2, - "edi": null, - "id": "D_CD_83_NDK_ACC_M27323" - }, - { - "attributes": [], - "baseline": null, - "cluster": 2, - "edi": null, - "id": "D_CD_84_84ZR085_ACC_U88822" - } - ], - "Settings": { - "contaminants": null, - "edge-filtering": null, - "threshold": 0.8 - } -} +{ + "Cluster sizes": [ + 4, + 3 + ], + "Degrees": { + "Distribution": [ + 2, + 3, + 2 + ], + "Model": "Waring", + "fitted": [ + 0.5000721527871422, + 0.24996196530120798, + 0.12496295268484243 + ], + "rho": 3287.8967604237114, + "rho CI": [ + 698.4419473417928, + 10000.0 + ] + }, + "Directed Edges": { + "Count": 0, + "Reasons for unresolved directions": { + "Missing dates": 7 + } + }, + "Edges": [ + { + "attributes": [ + "BULK" + ], + "directed": false, + "length": 0.045156, + "removed": false, + "sequences": [ + "B_FR_83_HXB2_ACC_K03455_5", + "B_US_83_RF_ACC_M17451" + ], + "source": 2, + "support": 0.0, + "target": 3 + }, + { + "attributes": [ + "BULK" + ], + "directed": false, + "length": 0.0296218, + "removed": false, + "sequences": [ + "B_FR_83_HXB2_ACC_K03455_5", + "B_US_86_JRFL_ACC_U63632" + ], + "source": 2, + "support": 0.0, + "target": 0 + }, + { + "attributes": [ + "BULK" + ], + "directed": false, + "length": 0.0327566, + "removed": false, + "sequences": [ + "B_FR_83_HXB2_ACC_K03455_5", + "B_US_90_WEAU160_ACC_U21135" + ], + "source": 2, + "support": 0.0, + "target": 1 + }, + { + "attributes": [ + "BULK" + ], + "directed": false, + "length": 0.048328, + "removed": false, + "sequences": [ + "B_US_83_RF_ACC_M17451", + "B_US_86_JRFL_ACC_U63632" + ], + "source": 3, + "support": 0.0, + "target": 0 + }, + { + "attributes": [ + "BULK" + ], + "directed": false, + "length": 0.0408994, + "removed": false, + "sequences": [ + "B_US_86_JRFL_ACC_U63632", + "B_US_90_WEAU160_ACC_U21135" + ], + "source": 0, + "support": 0.0, + "target": 1 + }, + { + "attributes": [ + "BULK" + ], + "directed": false, + "length": 0.0287246, + "removed": false, + "sequences": [ + "D_CD_83_ELI_ACC_K03454_7", + "D_CD_83_NDK_ACC_M27323" + ], + "source": 6, + "support": 0.0, + "target": 4 + }, + { + "attributes": [ + "BULK" + ], + "directed": false, + "length": 0.0491974, + "removed": false, + "sequences": [ + "D_CD_83_NDK_ACC_M27323", + "D_CD_84_84ZR085_ACC_U88822" + ], + "source": 4, + "support": 0.0, + "target": 5 + } + ], + "HIV Stages": { + "Unknown": 7 + }, + "Multiple sequences": { + "Followup, days": null, + "Subjects with": 0 + }, + "Network Summary": { + "Clusters": 2, + "Edges": 7, + "Nodes": 7, + "Sequences used to make links": 7 + }, + "Nodes": [ + { + "attributes": [], + "baseline": null, + "cluster": 1, + "edi": null, + "id": "B_FR_83_HXB2_ACC_K03455_5" + }, + { + "attributes": [], + "baseline": null, + "cluster": 1, + "edi": null, + "id": "B_US_83_RF_ACC_M17451" + }, + { + "attributes": [], + "baseline": null, + "cluster": 1, + "edi": null, + "id": "B_US_86_JRFL_ACC_U63632" + }, + { + "attributes": [], + "baseline": null, + "cluster": 1, + "edi": null, + "id": "B_US_90_WEAU160_ACC_U21135" + }, + { + "attributes": [], + "baseline": null, + "cluster": 2, + "edi": null, + "id": "D_CD_83_ELI_ACC_K03454_7" + }, + { + "attributes": [], + "baseline": null, + "cluster": 2, + "edi": null, + "id": "D_CD_83_NDK_ACC_M27323" + }, + { + "attributes": [], + "baseline": null, + "cluster": 2, + "edi": null, + "id": "D_CD_84_84ZR085_ACC_U88822" + } + ], + "Settings": { + "contaminants": null, + "edge-filtering": null, + "threshold": 0.8 + } +}