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author proteore
date Tue, 08 Jun 2021 14:21:50 +0000
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1 Wrapper for JVenn Diagram Tool
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2 ==============================
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3
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4 **Authors**
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6 Philippe Bardou, Jérôme Mariette, Frédéric Escudié, Christophe Djemiel and Christophe Klopp. jvenn: an interactive Venn diagram viewer. BMC Bioinformatics 2014, 15:293 doi:10.1186/1471-2105-15-293
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7
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8 **Galaxy integration**
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10 T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
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12 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit,Migale Bioinformatics platform
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14 Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.
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16 ------------------------------
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18 This tool draw a venn diagram from lists/files using Jvenn plug-in (http://jvenn.toulouse.inra.fr/app/index.html). It also creates output files that contain common or specific elements between query and each compared lists/files.
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19
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20 **Inputs**
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22 * **Query file:** A file containing different information of proteins, could be output of previous components.
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24 * **File of a list of IDs:** .TXT format, each line contains 1 ID
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26 AMY1A
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28 ALB
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30 IGKC
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32 CSTA
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33
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34 IGHA1
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36 ACTG1
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38 * **List of IDs:** IDs separated by a space
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39 AMY1A ALB IGKC CSTA IGHA1 ACTG1
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41 If you choose a file, it is necessary to specify the column where you would like to perform the comparison.
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42
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43 **Outputs**
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44
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45 * **Summary file** (venn_diagram_summary.html):
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46 Venn diagram: Could be downloaded as image (PNG, SVG)
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48 * **Venn text output file**
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49 A text file containing common/specific elements among compared lists/files.