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comparison topGO.xml @ 5:fdc8fbfbfcbc draft

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planemo upload commit 027ea4490224ff3f43a8917117b20cf56a7f2cb9-dirty
author proteore
date Fri, 14 Sep 2018 08:54:43 -0400
parents 820d706797ef
children 81d204aac06b
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4:820d706797ef 5:fdc8fbfbfcbc
1 <tool id="topGO" name="topGO" version="2018.09.13.2"> 1 <tool id="topGO" name="topGO" version="2018.09.14">
2 <description> 2 <description>
3 Enrichment analysis for Gene Ontology 3 Enrichment analysis for Gene Ontology
4 </description> 4 </description>
5 <requirements> 5 <requirements>
6 <requirement type="package" version="3.4.1">R</requirement> 6 <requirement type="package" version="3.4.1">R</requirement>
8 <requirement type="package" version="3.5.0">bioconductor-org.hs.eg.db</requirement> 8 <requirement type="package" version="3.5.0">bioconductor-org.hs.eg.db</requirement>
9 <requirement type="package" version="3.5.0">bioconductor-org.mm.eg.db</requirement> 9 <requirement type="package" version="3.5.0">bioconductor-org.mm.eg.db</requirement>
10 <requirement type="package" version="3.5.0">bioconductor-org.ce.eg.db</requirement> 10 <requirement type="package" version="3.5.0">bioconductor-org.ce.eg.db</requirement>
11 <requirement type="package" version="3.5.0">bioconductor-org.dm.eg.db</requirement> 11 <requirement type="package" version="3.5.0">bioconductor-org.dm.eg.db</requirement>
12 <requirement type="package" version="3.5.0">bioconductor-org.sc.sgd.db</requirement> 12 <requirement type="package" version="3.5.0">bioconductor-org.sc.sgd.db</requirement>
13 <requirement type="package" version="3.5.0">bioconductor-org.at.tair.db</requirement> 13 <!--requirement type="package" version="3.5.0">bioconductor-org.at.tair.db</requirement-->
14 <requirement type="package" version="1.56.0">bioconductor-graph</requirement> 14 <requirement type="package" version="1.56.0">bioconductor-graph</requirement>
15 <requirement type="package" version="1.40.0">bioconductor-annotationdbi</requirement> 15 <requirement type="package" version="1.40.0">bioconductor-annotationdbi</requirement>
16 <requirement type="package" version="3.5.0">bioconductor-go.db</requirement> 16 <requirement type="package" version="3.5.0">bioconductor-go.db</requirement>
17 <requirement type="package" version="2.30.0">bioconductor-topgo</requirement> 17 <requirement type="package" version="2.30.0">bioconductor-topgo</requirement>
18 </requirements> 18 </requirements>
85 <option value="FALSE" selected="false">No</option> 85 <option value="FALSE" selected="false">No</option>
86 </param> 86 </param>
87 </when> 87 </when>
88 </conditional> 88 </conditional>
89 <param name="geneuniverse" type="select" label="Select a specie"> 89 <param name="geneuniverse" type="select" label="Select a specie">
90 <option value="org.At.tair.db" >Arabidopsis</option> 90 <!--option value="org.At.tair.db" >Arabidopsis</option-->
91 <option value="org.Ce.eg.db" >C.elegans</option> 91 <option value="org.Ce.eg.db" >C.elegans</option>
92 <option value="org.Dm.eg.db" >Fly</option> 92 <option value="org.Dm.eg.db" >Fly</option>
93 <option value="org.Hs.eg.db" selected="true">Human</option> 93 <option value="org.Hs.eg.db" selected="true">Human</option>
94 <option value="org.Mm.eg.db" >Mouse</option> 94 <option value="org.Mm.eg.db" >Mouse</option>
95 <option value="org.Sc.sqd.db" >Yeast</option> 95 <option value="org.Sc.sqd.db" >Yeast</option>