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comparison topGO.xml @ 14:4ebc0fa10ebd draft

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planemo upload commit 7922e7b2850f347adc396a05641b37c9048a3653-dirty
author proteore
date Fri, 26 Oct 2018 08:26:00 -0400
parents bb92de0eb880
children da0bf437245d
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13:bb92de0eb880 14:4ebc0fa10ebd
1 <tool id="topGO" name="Enrichment analysis for Gene Ontology" version="2018.10.25"> 1 <tool id="topGO" name="Enrichment analysis for Gene Ontology" version="2018.10.26">
2 <description>(Human, Mouse, Rat) (topGO)</description> 2 <description>(Human, Mouse, Rat) (topGO)</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3.4.1">R</requirement> 4 <requirement type="package" version="3.4.1">R</requirement>
5 <requirement type="package" version="3.0.0">r-ggplot2</requirement> 5 <requirement type="package" version="3.0.0">r-ggplot2</requirement>
6 <requirement type="package" version="3.5.0">bioconductor-org.hs.eg.db</requirement> 6 <requirement type="package" version="3.5.0">bioconductor-org.hs.eg.db</requirement>
7 <requirement type="package" version="3.5.0">bioconductor-org.mm.eg.db</requirement> 7 <requirement type="package" version="3.5.0">bioconductor-org.mm.eg.db</requirement>
8 <requirement type="package" version="3.5.0">bioconductor-org.rn.eg.db</requirement>
8 <requirement type="package" version="3.5.0">bioconductor-org.ce.eg.db</requirement> 9 <requirement type="package" version="3.5.0">bioconductor-org.ce.eg.db</requirement>
9 <requirement type="package" version="3.5.0">bioconductor-org.dm.eg.db</requirement> 10 <requirement type="package" version="3.5.0">bioconductor-org.dm.eg.db</requirement>
10 <requirement type="package" version="3.5.0">bioconductor-org.sc.sgd.db</requirement> 11 <requirement type="package" version="3.5.0">bioconductor-org.sc.sgd.db</requirement>
11 <!--requirement type="package" version="3.5.0">bioconductor-org.at.tair.db</requirement--> 12 <!--requirement type="package" version="3.5.0">bioconductor-org.at.tair.db</requirement-->
12 <requirement type="package" version="1.56.0">bioconductor-graph</requirement> 13 <requirement type="package" version="1.56.0">bioconductor-graph</requirement>
106 <!--option value="org.At.tair.db" >Arabidopsis</option--> 107 <!--option value="org.At.tair.db" >Arabidopsis</option-->
107 <option value="org.Ce.eg.db" >Worm (C. elegans)</option> 108 <option value="org.Ce.eg.db" >Worm (C. elegans)</option>
108 <option value="org.Dm.eg.db" >Fly (D. melanogaster)</option> 109 <option value="org.Dm.eg.db" >Fly (D. melanogaster)</option>
109 <option value="org.Hs.eg.db" selected="true">Human (H. sapiens)</option> 110 <option value="org.Hs.eg.db" selected="true">Human (H. sapiens)</option>
110 <option value="org.Mm.eg.db" >Mouse (M. musculus)</option> 111 <option value="org.Mm.eg.db" >Mouse (M. musculus)</option>
112 <option value="org.Rn.eg.db" >Rat (Rattus norvegicus)</option>
111 <option value="org.Sc.sgd.db" >Yeast (S. cerevisiae)</option> 113 <option value="org.Sc.sgd.db" >Yeast (S. cerevisiae)</option>
112 </param> 114 </param>
113 <param name="ontocat" type="select" label="Ontology category"> 115 <param name="ontocat" type="select" label="Ontology category">
114 <option value="BP" >Biological Process</option> 116 <option value="BP" >Biological Process</option>
115 <option value="CC" >Cellular Component</option> 117 <option value="CC" >Cellular Component</option>