# HG changeset patch
# User proteore
# Date 1580723702 0
# Node ID 8e75580b7d3991b393c534899c1ddd26c526d614
# Parent  5dfe3d971bd23a97a1e6bb058b2c12a87275c3dd
"planemo upload commit 2e48dad9436cb087acaea82977d76544b04344f7-dirty"

diff -r 5dfe3d971bd2 -r 8e75580b7d39 Build_tissue-specific_expression_dataset.R
--- a/Build_tissue-specific_expression_dataset.R	Mon Feb 03 09:12:42 2020 +0000
+++ b/Build_tissue-specific_expression_dataset.R	Mon Feb 03 09:55:02 2020 +0000
@@ -17,6 +17,7 @@
 
 select_HPARNAseq<-function(hpa_ref, sample) {
   HPA.rnaTissue = read.table(hpa_ref,header=TRUE,sep="\t",stringsAsFactors = FALSE)
+  names(HPA.rnaTissue) = sapply(names(HPA.rnaTissue), function(string) gsub('Sample','Tissue',string),USE.NAMES = F)
   res.rna <- subset(HPA.rnaTissue, Tissue%in%sample)
   if ("Unit" %in% names(res.rna)){
       res.rna = subset(res.rna, select = -Unit)
@@ -56,7 +57,6 @@
 
   # Extract options
   data_source = args$data_source
-  names(data_source) = sapply(names(data_source), function(string) gsub('Sample','Tissue',string),USE.NAMES = F)
   hpa_ref = args$hpa_ref
   if (data_source == "IHC") {
     tissue = strsplit(args$tissue, ",")[[1]]
diff -r 5dfe3d971bd2 -r 8e75580b7d39 Build_tissue-specific_expression_dataset.xml
--- a/Build_tissue-specific_expression_dataset.xml	Mon Feb 03 09:12:42 2020 +0000
+++ b/Build_tissue-specific_expression_dataset.xml	Mon Feb 03 09:55:02 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="retrieve_from_hpa" name="Build tissue-specific expression dataset" version="2020.02.03.1">
+<tool id="retrieve_from_hpa" name="Build tissue-specific expression dataset" version="2020.02.03.2">
 <description>[Human Protein Atlas]</description>
 <requirements>
   <requirement type="package" version="3.4.1">R</requirement>
diff -r 5dfe3d971bd2 -r 8e75580b7d39 proteore_protein_atlas_rna_tissue.loc.sample
--- a/proteore_protein_atlas_rna_tissue.loc.sample	Mon Feb 03 09:12:42 2020 +0000
+++ b/proteore_protein_atlas_rna_tissue.loc.sample	Mon Feb 03 09:55:02 2020 +0000
@@ -1,2 +1,2 @@
 #<id>	<release>	<name>	<tissue>	<value>
-9979818977	HPA_RNA_23-10-2018	HPA RNA 23/10/2018	HPA_rna_tissue	tool-data/HPA_rna_tissue_23-10-2018.tsv
+9979818977	HPA_RNA_23-10-2018	HPA rna tissue 23/10/2018	HPA_rna_tissue	tool-data/HPA_rna_tissue_23-10-2018.tsv