# HG changeset patch
# User proteore
# Date 1535102150 14400
# Node ID 59c96f071853faad22822266b2ae0419cebdeb4d
# Parent 097bb3ed2b4d436f87a2fa856398f66387f575a4
planemo upload commit 236dcd048c7d82091c0be61bcb244efbb2c34d8d-dirty
diff -r 097bb3ed2b4d -r 59c96f071853 kegg_pathways.loc.sample
--- a/kegg_pathways.loc.sample Wed Aug 22 11:30:23 2018 -0400
+++ b/kegg_pathways.loc.sample Fri Aug 24 05:15:50 2018 -0400
@@ -1,2 +1,2 @@
-hsa_pathways Human (hsa) hsa tool-data/hsa_pathways.csv
-mmu_pathways Mouse (mmu) mmu tool-data/mmu_pathways.csv
\ No newline at end of file
+hsa_pathways Human (hsa) hsa tool-data/hsa_pathways.tsv
+mmu_pathways Mouse (mmu) mmu tool-data/mmu_pathways.tsv
\ No newline at end of file
diff -r 097bb3ed2b4d -r 59c96f071853 tool-data/hsa_pathways.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/hsa_pathways.tsv Fri Aug 24 05:15:50 2018 -0400
@@ -0,0 +1,330 @@
+#value name
+hsa00010 Glycolysis / Gluconeogenesis
+hsa00020 Citrate cycle (TCA cycle)
+hsa00030 Pentose phosphate pathway
+hsa00040 Pentose and glucuronate interconversions
+hsa00051 Fructose and mannose metabolism
+hsa00052 Galactose metabolism
+hsa00053 Ascorbate and aldarate metabolism
+hsa00061 Fatty acid biosynthesis
+hsa00062 Fatty acid elongation
+hsa00071 Fatty acid degradation
+hsa00072 Synthesis and degradation of ketone bodies
+hsa00100 Steroid biosynthesis
+hsa00120 Primary bile acid biosynthesis
+hsa00130 Ubiquinone and other terpenoid-quinone biosynthesis
+hsa00140 Steroid hormone biosynthesis
+hsa00190 Oxidative phosphorylation
+hsa00220 Arginine biosynthesis
+hsa00230 Purine metabolism
+hsa00232 Caffeine metabolism
+hsa00240 Pyrimidine metabolism
+hsa00250 Alanine, aspartate and glutamate metabolism
+hsa00260 Glycine, serine and threonine metabolism
+hsa00270 Cysteine and methionine metabolism
+hsa00280 Valine, leucine and isoleucine degradation
+hsa00290 Valine, leucine and isoleucine biosynthesis
+hsa00310 Lysine degradation
+hsa00330 Arginine and proline metabolism
+hsa00340 Histidine metabolism
+hsa00350 Tyrosine metabolism
+hsa00360 Phenylalanine metabolism
+hsa00380 Tryptophan metabolism
+hsa00400 Phenylalanine, tyrosine and tryptophan biosynthesis
+hsa00410 beta-Alanine metabolism
+hsa00430 Taurine and hypotaurine metabolism
+hsa00440 Phosphonate and phosphinate metabolism
+hsa00450 Selenocompound metabolism
+hsa00471 D-Glutamine and D-glutamate metabolism
+hsa00472 D-Arginine and D-ornithine metabolism
+hsa00480 Glutathione metabolism
+hsa00500 Starch and sucrose metabolism
+hsa00510 N-Glycan biosynthesis
+hsa00511 Other glycan degradation
+hsa00512 Mucin type O-glycan biosynthesis
+hsa00514 Other types of O-glycan biosynthesis
+hsa00515 Mannose type O-glycan biosynthesis
+hsa00520 Amino sugar and nucleotide sugar metabolism
+hsa00524 Neomycin, kanamycin and gentamicin biosynthesis
+hsa00531 Glycosaminoglycan degradation
+hsa00532 Glycosaminoglycan biosynthesis
+hsa00533 Glycosaminoglycan biosynthesis
+hsa00534 Glycosaminoglycan biosynthesis
+hsa00561 Glycerolipid metabolism
+hsa00562 Inositol phosphate metabolism
+hsa00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
+hsa00564 Glycerophospholipid metabolism
+hsa00565 Ether lipid metabolism
+hsa00590 Arachidonic acid metabolism
+hsa00591 Linoleic acid metabolism
+hsa00592 alpha-Linolenic acid metabolism
+hsa00600 Sphingolipid metabolism
+hsa00601 Glycosphingolipid biosynthesis
+hsa00603 Glycosphingolipid biosynthesis
+hsa00604 Glycosphingolipid biosynthesis
+hsa00620 Pyruvate metabolism
+hsa00630 Glyoxylate and dicarboxylate metabolism
+hsa00640 Propanoate metabolism
+hsa00650 Butanoate metabolism
+hsa00670 One carbon pool by folate
+hsa00730 Thiamine metabolism
+hsa00740 Riboflavin metabolism
+hsa00750 Vitamin B6 metabolism
+hsa00760 Nicotinate and nicotinamide metabolism
+hsa00770 Pantothenate and CoA biosynthesis
+hsa00780 Biotin metabolism
+hsa00785 Lipoic acid metabolism
+hsa00790 Folate biosynthesis
+hsa00830 Retinol metabolism
+hsa00860 Porphyrin and chlorophyll metabolism
+hsa00900 Terpenoid backbone biosynthesis
+hsa00910 Nitrogen metabolism
+hsa00920 Sulfur metabolism
+hsa00970 Aminoacyl-tRNA biosynthesis
+hsa00980 Metabolism of xenobiotics by cytochrome P450
+hsa00982 Drug metabolism
+hsa00983 Drug metabolism
+hsa01040 Biosynthesis of unsaturated fatty acids
+hsa01100 Metabolic pathways
+hsa01200 Carbon metabolism
+hsa01210 2-Oxocarboxylic acid metabolism
+hsa01212 Fatty acid metabolism
+hsa01230 Biosynthesis of amino acids
+hsa01521 EGFR tyrosine kinase inhibitor resistance
+hsa01522 Endocrine resistance
+hsa01523 Antifolate resistance
+hsa01524 Platinum drug resistance
+hsa02010 ABC transporters
+hsa03008 Ribosome biogenesis in eukaryotes
+hsa03010 Ribosome
+hsa03013 RNA transport
+hsa03015 mRNA surveillance pathway
+hsa03018 RNA degradation
+hsa03020 RNA polymerase
+hsa03022 Basal transcription factors
+hsa03030 DNA replication
+hsa03040 Spliceosome
+hsa03050 Proteasome
+hsa03060 Protein export
+hsa03320 PPAR signaling pathway
+hsa03410 Base excision repair
+hsa03420 Nucleotide excision repair
+hsa03430 Mismatch repair
+hsa03440 Homologous recombination
+hsa03450 Non-homologous end-joining
+hsa03460 Fanconi anemia pathway
+hsa04010 MAPK signaling pathway
+hsa04012 ErbB signaling pathway
+hsa04014 Ras signaling pathway
+hsa04015 Rap1 signaling pathway
+hsa04020 Calcium signaling pathway
+hsa04022 cGMP-PKG signaling pathway
+hsa04024 cAMP signaling pathway
+hsa04060 Cytokine-cytokine receptor interaction
+hsa04062 Chemokine signaling pathway
+hsa04064 NF-kappa B signaling pathway
+hsa04066 HIF-1 signaling pathway
+hsa04068 FoxO signaling pathway
+hsa04070 Phosphatidylinositol signaling system
+hsa04071 Sphingolipid signaling pathway
+hsa04072 Phospholipase D signaling pathway
+hsa04080 Neuroactive ligand-receptor interaction
+hsa04110 Cell cycle
+hsa04114 Oocyte meiosis
+hsa04115 p53 signaling pathway
+hsa04120 Ubiquitin mediated proteolysis
+hsa04122 Sulfur relay system
+hsa04130 SNARE interactions in vesicular transport
+hsa04136 Autophagy
+hsa04137 Mitophagy
+hsa04140 Autophagy
+hsa04141 Protein processing in endoplasmic reticulum
+hsa04142 Lysosome
+hsa04144 Endocytosis
+hsa04145 Phagosome
+hsa04146 Peroxisome
+hsa04150 mTOR signaling pathway
+hsa04151 PI3K-Akt signaling pathway
+hsa04152 AMPK signaling pathway
+hsa04210 Apoptosis
+hsa04211 Longevity regulating pathway
+hsa04213 Longevity regulating pathway
+hsa04215 Apoptosis
+hsa04216 Ferroptosis
+hsa04217 Necroptosis
+hsa04218 Cellular senescence
+hsa04260 Cardiac muscle contraction
+hsa04261 Adrenergic signaling in cardiomyocytes
+hsa04270 Vascular smooth muscle contraction
+hsa04310 Wnt signaling pathway
+hsa04330 Notch signaling pathway
+hsa04340 Hedgehog signaling pathway
+hsa04350 TGF-beta signaling pathway
+hsa04360 Axon guidance
+hsa04370 VEGF signaling pathway
+hsa04371 Apelin signaling pathway
+hsa04380 Osteoclast differentiation
+hsa04390 Hippo signaling pathway
+hsa04392 Hippo signaling pathway
+hsa04510 Focal adhesion
+hsa04512 ECM-receptor interaction
+hsa04514 Cell adhesion molecules (CAMs)
+hsa04520 Adherens junction
+hsa04530 Tight junction
+hsa04540 Gap junction
+hsa04550 Signaling pathways regulating pluripotency of stem cells
+hsa04610 Complement and coagulation cascades
+hsa04611 Platelet activation
+hsa04612 Antigen processing and presentation
+hsa04614 Renin-angiotensin system
+hsa04620 Toll-like receptor signaling pathway
+hsa04621 NOD-like receptor signaling pathway
+hsa04622 RIG-I-like receptor signaling pathway
+hsa04623 Cytosolic DNA-sensing pathway
+hsa04625 C-type lectin receptor signaling pathway
+hsa04630 Jak-STAT signaling pathway
+hsa04640 Hematopoietic cell lineage
+hsa04650 Natural killer cell mediated cytotoxicity
+hsa04657 IL-17 signaling pathway
+hsa04658 Th1 and Th2 cell differentiation
+hsa04659 Th17 cell differentiation
+hsa04660 T cell receptor signaling pathway
+hsa04662 B cell receptor signaling pathway
+hsa04664 Fc epsilon RI signaling pathway
+hsa04666 Fc gamma R-mediated phagocytosis
+hsa04668 TNF signaling pathway
+hsa04670 Leukocyte transendothelial migration
+hsa04672 Intestinal immune network for IgA production
+hsa04710 Circadian rhythm
+hsa04713 Circadian entrainment
+hsa04714 Thermogenesis
+hsa04720 Long-term potentiation
+hsa04721 Synaptic vesicle cycle
+hsa04722 Neurotrophin signaling pathway
+hsa04723 Retrograde endocannabinoid signaling
+hsa04724 Glutamatergic synapse
+hsa04725 Cholinergic synapse
+hsa04726 Serotonergic synapse
+hsa04727 GABAergic synapse
+hsa04728 Dopaminergic synapse
+hsa04730 Long-term depression
+hsa04740 Olfactory transduction
+hsa04742 Taste transduction
+hsa04744 Phototransduction
+hsa04750 Inflammatory mediator regulation of TRP channels
+hsa04810 Regulation of actin cytoskeleton
+hsa04910 Insulin signaling pathway
+hsa04911 Insulin secretion
+hsa04912 GnRH signaling pathway
+hsa04913 Ovarian steroidogenesis
+hsa04914 Progesterone-mediated oocyte maturation
+hsa04915 Estrogen signaling pathway
+hsa04916 Melanogenesis
+hsa04917 Prolactin signaling pathway
+hsa04918 Thyroid hormone synthesis
+hsa04919 Thyroid hormone signaling pathway
+hsa04920 Adipocytokine signaling pathway
+hsa04921 Oxytocin signaling pathway
+hsa04922 Glucagon signaling pathway
+hsa04923 Regulation of lipolysis in adipocytes
+hsa04924 Renin secretion
+hsa04925 Aldosterone synthesis and secretion
+hsa04926 Relaxin signaling pathway
+hsa04927 Cortisol synthesis and secretion
+hsa04928 Parathyroid hormone synthesis, secretion and action
+hsa04930 Type II diabetes mellitus
+hsa04931 Insulin resistance
+hsa04932 Non-alcoholic fatty liver disease (NAFLD)
+hsa04933 AGE-RAGE signaling pathway in diabetic complications
+hsa04934 Cushing's syndrome
+hsa04940 Type I diabetes mellitus
+hsa04950 Maturity onset diabetes of the young
+hsa04960 Aldosterone-regulated sodium reabsorption
+hsa04961 Endocrine and other factor-regulated calcium reabsorption
+hsa04962 Vasopressin-regulated water reabsorption
+hsa04964 Proximal tubule bicarbonate reclamation
+hsa04966 Collecting duct acid secretion
+hsa04970 Salivary secretion
+hsa04971 Gastric acid secretion
+hsa04972 Pancreatic secretion
+hsa04973 Carbohydrate digestion and absorption
+hsa04974 Protein digestion and absorption
+hsa04975 Fat digestion and absorption
+hsa04976 Bile secretion
+hsa04977 Vitamin digestion and absorption
+hsa04978 Mineral absorption
+hsa04979 Cholesterol metabolism
+hsa05010 Alzheimer's disease
+hsa05012 Parkinson's disease
+hsa05014 Amyotrophic lateral sclerosis (ALS)
+hsa05016 Huntington's disease
+hsa05020 Prion diseases
+hsa05030 Cocaine addiction
+hsa05031 Amphetamine addiction
+hsa05032 Morphine addiction
+hsa05033 Nicotine addiction
+hsa05034 Alcoholism
+hsa05100 Bacterial invasion of epithelial cells
+hsa05110 Vibrio cholerae infection
+hsa05120 Epithelial cell signaling in Helicobacter pylori infection
+hsa05130 Pathogenic Escherichia coli infection
+hsa05131 Shigellosis
+hsa05132 Salmonella infection
+hsa05133 Pertussis
+hsa05134 Legionellosis
+hsa05140 Leishmaniasis
+hsa05142 Chagas disease (American trypanosomiasis)
+hsa05143 African trypanosomiasis
+hsa05144 Malaria
+hsa05145 Toxoplasmosis
+hsa05146 Amoebiasis
+hsa05150 Staphylococcus aureus infection
+hsa05152 Tuberculosis
+hsa05160 Hepatitis C
+hsa05161 Hepatitis B
+hsa05162 Measles
+hsa05163 Human cytomegalovirus infection
+hsa05164 Influenza A
+hsa05165 Human papillomavirus infection
+hsa05166 HTLV-I infection
+hsa05167 Kaposi's sarcoma-associated herpesvirus infection
+hsa05168 Herpes simplex infection
+hsa05169 Epstein-Barr virus infection
+hsa05200 Pathways in cancer
+hsa05202 Transcriptional misregulation in cancer
+hsa05203 Viral carcinogenesis
+hsa05204 Chemical carcinogenesis
+hsa05205 Proteoglycans in cancer
+hsa05206 MicroRNAs in cancer
+hsa05210 Colorectal cancer
+hsa05211 Renal cell carcinoma
+hsa05212 Pancreatic cancer
+hsa05213 Endometrial cancer
+hsa05214 Glioma
+hsa05215 Prostate cancer
+hsa05216 Thyroid cancer
+hsa05217 Basal cell carcinoma
+hsa05218 Melanoma
+hsa05219 Bladder cancer
+hsa05220 Chronic myeloid leukemia
+hsa05221 Acute myeloid leukemia
+hsa05222 Small cell lung cancer
+hsa05223 Non-small cell lung cancer
+hsa05224 Breast cancer
+hsa05225 Hepatocellular carcinoma
+hsa05226 Gastric cancer
+hsa05230 Central carbon metabolism in cancer
+hsa05231 Choline metabolism in cancer
+hsa05310 Asthma
+hsa05320 Autoimmune thyroid disease
+hsa05321 Inflammatory bowel disease (IBD)
+hsa05322 Systemic lupus erythematosus
+hsa05323 Rheumatoid arthritis
+hsa05330 Allograft rejection
+hsa05332 Graft-versus-host disease
+hsa05340 Primary immunodeficiency
+hsa05410 Hypertrophic cardiomyopathy (HCM)
+hsa05412 Arrhythmogenic right ventricular cardiomyopathy (ARVC)
+hsa05414 Dilated cardiomyopathy (DCM)
+hsa05416 Viral myocarditis
+hsa05418 Fluid shear stress and atherosclerosis
diff -r 097bb3ed2b4d -r 59c96f071853 tool-data/mmu_pathways.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/mmu_pathways.tsv Fri Aug 24 05:15:50 2018 -0400
@@ -0,0 +1,326 @@
+#value name
+mmu00010 Glycolysis / Gluconeogenesis
+mmu00020 Citrate cycle (TCA cycle)
+mmu00030 Pentose phosphate pathway
+mmu00040 Pentose and glucuronate interconversions
+mmu00051 Fructose and mannose metabolism
+mmu00052 Galactose metabolism
+mmu00053 Ascorbate and aldarate metabolism
+mmu00061 Fatty acid biosynthesis
+mmu00062 Fatty acid elongation
+mmu00071 Fatty acid degradation
+mmu00072 Synthesis and degradation of ketone bodies
+mmu00100 Steroid biosynthesis
+mmu00120 Primary bile acid biosynthesis
+mmu00130 Ubiquinone and other terpenoid-quinone biosynthesis
+mmu00140 Steroid hormone biosynthesis
+mmu00190 Oxidative phosphorylation
+mmu00220 Arginine biosynthesis
+mmu00230 Purine metabolism
+mmu00232 Caffeine metabolism
+mmu00240 Pyrimidine metabolism
+mmu00250 Alanine, aspartate and glutamate metabolism
+mmu00260 Glycine, serine and threonine metabolism
+mmu00270 Cysteine and methionine metabolism
+mmu00280 Valine, leucine and isoleucine degradation
+mmu00290 Valine, leucine and isoleucine biosynthesis
+mmu00310 Lysine degradation
+mmu00330 Arginine and proline metabolism
+mmu00340 Histidine metabolism
+mmu00350 Tyrosine metabolism
+mmu00360 Phenylalanine metabolism
+mmu00380 Tryptophan metabolism
+mmu00400 Phenylalanine, tyrosine and tryptophan biosynthesis
+mmu00410 beta-Alanine metabolism
+mmu00430 Taurine and hypotaurine metabolism
+mmu00440 Phosphonate and phosphinate metabolism
+mmu00450 Selenocompound metabolism
+mmu00471 D-Glutamine and D-glutamate metabolism
+mmu00472 D-Arginine and D-ornithine metabolism
+mmu00480 Glutathione metabolism
+mmu00500 Starch and sucrose metabolism
+mmu00510 N-Glycan biosynthesis
+mmu00511 Other glycan degradation
+mmu00512 Mucin type O-glycan biosynthesis
+mmu00514 Other types of O-glycan biosynthesis
+mmu00515 Mannose type O-glycan biosynthesis
+mmu00520 Amino sugar and nucleotide sugar metabolism
+mmu00524 Neomycin, kanamycin and gentamicin biosynthesis
+mmu00531 Glycosaminoglycan degradation
+mmu00532 Glycosaminoglycan biosynthesis
+mmu00533 Glycosaminoglycan biosynthesis
+mmu00534 Glycosaminoglycan biosynthesis
+mmu00561 Glycerolipid metabolism
+mmu00562 Inositol phosphate metabolism
+mmu00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
+mmu00564 Glycerophospholipid metabolism
+mmu00565 Ether lipid metabolism
+mmu00590 Arachidonic acid metabolism
+mmu00591 Linoleic acid metabolism
+mmu00592 alpha-Linolenic acid metabolism
+mmu00600 Sphingolipid metabolism
+mmu00601 Glycosphingolipid biosynthesis
+mmu00603 Glycosphingolipid biosynthesis
+mmu00604 Glycosphingolipid biosynthesis
+mmu00620 Pyruvate metabolism
+mmu00630 Glyoxylate and dicarboxylate metabolism
+mmu00640 Propanoate metabolism
+mmu00650 Butanoate metabolism
+mmu00670 One carbon pool by folate
+mmu00730 Thiamine metabolism
+mmu00740 Riboflavin metabolism
+mmu00750 Vitamin B6 metabolism
+mmu00760 Nicotinate and nicotinamide metabolism
+mmu00770 Pantothenate and CoA biosynthesis
+mmu00780 Biotin metabolism
+mmu00785 Lipoic acid metabolism
+mmu00790 Folate biosynthesis
+mmu00830 Retinol metabolism
+mmu00860 Porphyrin and chlorophyll metabolism
+mmu00900 Terpenoid backbone biosynthesis
+mmu00910 Nitrogen metabolism
+mmu00920 Sulfur metabolism
+mmu00970 Aminoacyl-tRNA biosynthesis
+mmu00980 Metabolism of xenobiotics by cytochrome P450
+mmu00982 Drug metabolism
+mmu00983 Drug metabolism
+mmu01040 Biosynthesis of unsaturated fatty acids
+mmu01100 Metabolic pathways
+mmu01200 Carbon metabolism
+mmu01210 2-Oxocarboxylic acid metabolism
+mmu01212 Fatty acid metabolism
+mmu01230 Biosynthesis of amino acids
+mmu01521 EGFR tyrosine kinase inhibitor resistance
+mmu01522 Endocrine resistance
+mmu01523 Antifolate resistance
+mmu01524 Platinum drug resistance
+mmu02010 ABC transporters
+mmu03008 Ribosome biogenesis in eukaryotes
+mmu03010 Ribosome
+mmu03013 RNA transport
+mmu03015 mRNA surveillance pathway
+mmu03018 RNA degradation
+mmu03020 RNA polymerase
+mmu03022 Basal transcription factors
+mmu03030 DNA replication
+mmu03040 Spliceosome
+mmu03050 Proteasome
+mmu03060 Protein export
+mmu03320 PPAR signaling pathway
+mmu03410 Base excision repair
+mmu03420 Nucleotide excision repair
+mmu03430 Mismatch repair
+mmu03440 Homologous recombination
+mmu03450 Non-homologous end-joining
+mmu03460 Fanconi anemia pathway
+mmu04010 MAPK signaling pathway
+mmu04012 ErbB signaling pathway
+mmu04014 Ras signaling pathway
+mmu04015 Rap1 signaling pathway
+mmu04020 Calcium signaling pathway
+mmu04022 cGMP-PKG signaling pathway
+mmu04024 cAMP signaling pathway
+mmu04060 Cytokine-cytokine receptor interaction
+mmu04062 Chemokine signaling pathway
+mmu04064 NF-kappa B signaling pathway
+mmu04066 HIF-1 signaling pathway
+mmu04068 FoxO signaling pathway
+mmu04070 Phosphatidylinositol signaling system
+mmu04071 Sphingolipid signaling pathway
+mmu04072 Phospholipase D signaling pathway
+mmu04080 Neuroactive ligand-receptor interaction
+mmu04110 Cell cycle
+mmu04114 Oocyte meiosis
+mmu04115 p53 signaling pathway
+mmu04120 Ubiquitin mediated proteolysis
+mmu04122 Sulfur relay system
+mmu04130 SNARE interactions in vesicular transport
+mmu04136 Autophagy
+mmu04137 Mitophagy
+mmu04140 Autophagy
+mmu04141 Protein processing in endoplasmic reticulum
+mmu04142 Lysosome
+mmu04144 Endocytosis
+mmu04145 Phagosome
+mmu04146 Peroxisome
+mmu04150 mTOR signaling pathway
+mmu04151 PI3K-Akt signaling pathway
+mmu04152 AMPK signaling pathway
+mmu04210 Apoptosis
+mmu04211 Longevity regulating pathway
+mmu04213 Longevity regulating pathway
+mmu04215 Apoptosis
+mmu04216 Ferroptosis
+mmu04217 Necroptosis
+mmu04218 Cellular senescence
+mmu04260 Cardiac muscle contraction
+mmu04261 Adrenergic signaling in cardiomyocytes
+mmu04270 Vascular smooth muscle contraction
+mmu04310 Wnt signaling pathway
+mmu04330 Notch signaling pathway
+mmu04340 Hedgehog signaling pathway
+mmu04350 TGF-beta signaling pathway
+mmu04360 Axon guidance
+mmu04370 VEGF signaling pathway
+mmu04371 Apelin signaling pathway
+mmu04380 Osteoclast differentiation
+mmu04390 Hippo signaling pathway
+mmu04392 Hippo signaling pathway
+mmu04510 Focal adhesion
+mmu04512 ECM-receptor interaction
+mmu04514 Cell adhesion molecules (CAMs)
+mmu04520 Adherens junction
+mmu04530 Tight junction
+mmu04540 Gap junction
+mmu04550 Signaling pathways regulating pluripotency of stem cells
+mmu04610 Complement and coagulation cascades
+mmu04611 Platelet activation
+mmu04612 Antigen processing and presentation
+mmu04614 Renin-angiotensin system
+mmu04620 Toll-like receptor signaling pathway
+mmu04621 NOD-like receptor signaling pathway
+mmu04622 RIG-I-like receptor signaling pathway
+mmu04623 Cytosolic DNA-sensing pathway
+mmu04625 C-type lectin receptor signaling pathway
+mmu04630 Jak-STAT signaling pathway
+mmu04640 Hematopoietic cell lineage
+mmu04650 Natural killer cell mediated cytotoxicity
+mmu04657 IL-17 signaling pathway
+mmu04658 Th1 and Th2 cell differentiation
+mmu04659 Th17 cell differentiation
+mmu04660 T cell receptor signaling pathway
+mmu04662 B cell receptor signaling pathway
+mmu04664 Fc epsilon RI signaling pathway
+mmu04666 Fc gamma R-mediated phagocytosis
+mmu04668 TNF signaling pathway
+mmu04670 Leukocyte transendothelial migration
+mmu04672 Intestinal immune network for IgA production
+mmu04710 Circadian rhythm
+mmu04713 Circadian entrainment
+mmu04714 Thermogenesis
+mmu04720 Long-term potentiation
+mmu04721 Synaptic vesicle cycle
+mmu04722 Neurotrophin signaling pathway
+mmu04723 Retrograde endocannabinoid signaling
+mmu04724 Glutamatergic synapse
+mmu04725 Cholinergic synapse
+mmu04726 Serotonergic synapse
+mmu04727 GABAergic synapse
+mmu04728 Dopaminergic synapse
+mmu04730 Long-term depression
+mmu04740 Olfactory transduction
+mmu04742 Taste transduction
+mmu04744 Phototransduction
+mmu04750 Inflammatory mediator regulation of TRP channels
+mmu04810 Regulation of actin cytoskeleton
+mmu04910 Insulin signaling pathway
+mmu04911 Insulin secretion
+mmu04912 GnRH signaling pathway
+mmu04913 Ovarian steroidogenesis
+mmu04914 Progesterone-mediated oocyte maturation
+mmu04915 Estrogen signaling pathway
+mmu04916 Melanogenesis
+mmu04917 Prolactin signaling pathway
+mmu04918 Thyroid hormone synthesis
+mmu04919 Thyroid hormone signaling pathway
+mmu04920 Adipocytokine signaling pathway
+mmu04921 Oxytocin signaling pathway
+mmu04922 Glucagon signaling pathway
+mmu04923 Regulation of lipolysis in adipocytes
+mmu04924 Renin secretion
+mmu04925 Aldosterone synthesis and secretion
+mmu04926 Relaxin signaling pathway
+mmu04927 Cortisol synthesis and secretion
+mmu04928 Parathyroid hormone synthesis, secretion and action
+mmu04930 Type II diabetes mellitus
+mmu04931 Insulin resistance
+mmu04932 Non-alcoholic fatty liver disease (NAFLD)
+mmu04933 AGE-RAGE signaling pathway in diabetic complications
+mmu04934 Cushing's syndrome
+mmu04940 Type I diabetes mellitus
+mmu04950 Maturity onset diabetes of the young
+mmu04960 Aldosterone-regulated sodium reabsorption
+mmu04961 Endocrine and other factor-regulated calcium reabsorption
+mmu04962 Vasopressin-regulated water reabsorption
+mmu04964 Proximal tubule bicarbonate reclamation
+mmu04966 Collecting duct acid secretion
+mmu04970 Salivary secretion
+mmu04971 Gastric acid secretion
+mmu04972 Pancreatic secretion
+mmu04973 Carbohydrate digestion and absorption
+mmu04974 Protein digestion and absorption
+mmu04975 Fat digestion and absorption
+mmu04976 Bile secretion
+mmu04977 Vitamin digestion and absorption
+mmu04978 Mineral absorption
+mmu04979 Cholesterol metabolism
+mmu05010 Alzheimer's disease
+mmu05012 Parkinson's disease
+mmu05014 Amyotrophic lateral sclerosis (ALS)
+mmu05016 Huntington's disease
+mmu05020 Prion diseases
+mmu05030 Cocaine addiction
+mmu05031 Amphetamine addiction
+mmu05032 Morphine addiction
+mmu05033 Nicotine addiction
+mmu05034 Alcoholism
+mmu05100 Bacterial invasion of epithelial cells
+mmu05132 Salmonella infection
+mmu05133 Pertussis
+mmu05134 Legionellosis
+mmu05140 Leishmaniasis
+mmu05142 Chagas disease (American trypanosomiasis)
+mmu05143 African trypanosomiasis
+mmu05144 Malaria
+mmu05145 Toxoplasmosis
+mmu05146 Amoebiasis
+mmu05150 Staphylococcus aureus infection
+mmu05152 Tuberculosis
+mmu05160 Hepatitis C
+mmu05161 Hepatitis B
+mmu05162 Measles
+mmu05163 Human cytomegalovirus infection
+mmu05164 Influenza A
+mmu05165 Human papillomavirus infection
+mmu05166 HTLV-I infection
+mmu05167 Kaposi's sarcoma-associated herpesvirus infection
+mmu05168 Herpes simplex infection
+mmu05169 Epstein-Barr virus infection
+mmu05200 Pathways in cancer
+mmu05202 Transcriptional misregulation in cancer
+mmu05203 Viral carcinogenesis
+mmu05204 Chemical carcinogenesis
+mmu05205 Proteoglycans in cancer
+mmu05206 MicroRNAs in cancer
+mmu05210 Colorectal cancer
+mmu05211 Renal cell carcinoma
+mmu05212 Pancreatic cancer
+mmu05213 Endometrial cancer
+mmu05214 Glioma
+mmu05215 Prostate cancer
+mmu05216 Thyroid cancer
+mmu05217 Basal cell carcinoma
+mmu05218 Melanoma
+mmu05219 Bladder cancer
+mmu05220 Chronic myeloid leukemia
+mmu05221 Acute myeloid leukemia
+mmu05222 Small cell lung cancer
+mmu05223 Non-small cell lung cancer
+mmu05224 Breast cancer
+mmu05225 Hepatocellular carcinoma
+mmu05226 Gastric cancer
+mmu05230 Central carbon metabolism in cancer
+mmu05231 Choline metabolism in cancer
+mmu05310 Asthma
+mmu05320 Autoimmune thyroid disease
+mmu05321 Inflammatory bowel disease (IBD)
+mmu05322 Systemic lupus erythematosus
+mmu05323 Rheumatoid arthritis
+mmu05330 Allograft rejection
+mmu05332 Graft-versus-host disease
+mmu05340 Primary immunodeficiency
+mmu05410 Hypertrophic cardiomyopathy (HCM)
+mmu05412 Arrhythmogenic right ventricular cardiomyopathy (ARVC)
+mmu05414 Dilated cardiomyopathy (DCM)
+mmu05416 Viral myocarditis
+mmu05418 Fluid shear stress and atherosclerosis
diff -r 097bb3ed2b4d -r 59c96f071853 tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample Wed Aug 22 11:30:23 2018 -0400
+++ b/tool_data_table_conf.xml.sample Fri Aug 24 05:15:50 2018 -0400
@@ -4,4 +4,12 @@
dbkey,name,value,path
+
+
\ No newline at end of file