Mercurial > repos > proteore > proteore_pathview_mapping
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| author | proteore |
|---|---|
| date | Mon, 27 Aug 2018 11:21:34 -0400 |
| parents | 097bb3ed2b4d |
| children | 33c9bd75882a |
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Wrapper for Pathview tool ============================= **Authors** David Christiany, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform This work has been partially funded through the French National Agency for Research (ANR) IFB project. Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool. ============================= This tool map a list of Uniprot Accession number or Entrez gene ID to KEGG pathway with pathview R package. Select an input file containing ids in a column, set header and column number or copy/paste your ids. Select your identifier type and a species of interest (for now only human available). Select one or several pathways of interest from the dropdown menu or copy/paste KEGG pathway id(s) Select the graph format : KEGG or graphviz Uniprot accession number converted to Entrez geneID or Entrez geneID are mapped to each selected pathways. Output : One file (png or pdf) for each selected pathway.
