Mercurial > repos > proteore > proteore_pathview_mapping

comparison mmu_pathways.tsv.sample @ 2:db86d160bcba draft

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planemo upload commit e3908c09d490dd7180d715c90184ba4029544524-dirty
author proteore
date Fri, 24 Aug 2018 05:19:09 -0400
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1:59c96f071853 2:db86d160bcba
1 #value name
2 mmu00010 Glycolysis / Gluconeogenesis
3 mmu00020 Citrate cycle (TCA cycle)
4 mmu00030 Pentose phosphate pathway
5 mmu00040 Pentose and glucuronate interconversions
6 mmu00051 Fructose and mannose metabolism
7 mmu00052 Galactose metabolism
8 mmu00053 Ascorbate and aldarate metabolism
9 mmu00061 Fatty acid biosynthesis
10 mmu00062 Fatty acid elongation
11 mmu00071 Fatty acid degradation
12 mmu00072 Synthesis and degradation of ketone bodies
13 mmu00100 Steroid biosynthesis
14 mmu00120 Primary bile acid biosynthesis
15 mmu00130 Ubiquinone and other terpenoid-quinone biosynthesis
16 mmu00140 Steroid hormone biosynthesis
17 mmu00190 Oxidative phosphorylation
18 mmu00220 Arginine biosynthesis
19 mmu00230 Purine metabolism
20 mmu00232 Caffeine metabolism
21 mmu00240 Pyrimidine metabolism
22 mmu00250 Alanine, aspartate and glutamate metabolism
23 mmu00260 Glycine, serine and threonine metabolism
24 mmu00270 Cysteine and methionine metabolism
25 mmu00280 Valine, leucine and isoleucine degradation
26 mmu00290 Valine, leucine and isoleucine biosynthesis
27 mmu00310 Lysine degradation
28 mmu00330 Arginine and proline metabolism
29 mmu00340 Histidine metabolism
30 mmu00350 Tyrosine metabolism
31 mmu00360 Phenylalanine metabolism
32 mmu00380 Tryptophan metabolism
33 mmu00400 Phenylalanine, tyrosine and tryptophan biosynthesis
34 mmu00410 beta-Alanine metabolism
35 mmu00430 Taurine and hypotaurine metabolism
36 mmu00440 Phosphonate and phosphinate metabolism
37 mmu00450 Selenocompound metabolism
38 mmu00471 D-Glutamine and D-glutamate metabolism
39 mmu00472 D-Arginine and D-ornithine metabolism
40 mmu00480 Glutathione metabolism
41 mmu00500 Starch and sucrose metabolism
42 mmu00510 N-Glycan biosynthesis
43 mmu00511 Other glycan degradation
44 mmu00512 Mucin type O-glycan biosynthesis
45 mmu00514 Other types of O-glycan biosynthesis
46 mmu00515 Mannose type O-glycan biosynthesis
47 mmu00520 Amino sugar and nucleotide sugar metabolism
48 mmu00524 Neomycin, kanamycin and gentamicin biosynthesis
49 mmu00531 Glycosaminoglycan degradation
50 mmu00532 Glycosaminoglycan biosynthesis
51 mmu00533 Glycosaminoglycan biosynthesis
52 mmu00534 Glycosaminoglycan biosynthesis
53 mmu00561 Glycerolipid metabolism
54 mmu00562 Inositol phosphate metabolism
55 mmu00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
56 mmu00564 Glycerophospholipid metabolism
57 mmu00565 Ether lipid metabolism
58 mmu00590 Arachidonic acid metabolism
59 mmu00591 Linoleic acid metabolism
60 mmu00592 alpha-Linolenic acid metabolism
61 mmu00600 Sphingolipid metabolism
62 mmu00601 Glycosphingolipid biosynthesis
63 mmu00603 Glycosphingolipid biosynthesis
64 mmu00604 Glycosphingolipid biosynthesis
65 mmu00620 Pyruvate metabolism
66 mmu00630 Glyoxylate and dicarboxylate metabolism
67 mmu00640 Propanoate metabolism
68 mmu00650 Butanoate metabolism
69 mmu00670 One carbon pool by folate
70 mmu00730 Thiamine metabolism
71 mmu00740 Riboflavin metabolism
72 mmu00750 Vitamin B6 metabolism
73 mmu00760 Nicotinate and nicotinamide metabolism
74 mmu00770 Pantothenate and CoA biosynthesis
75 mmu00780 Biotin metabolism
76 mmu00785 Lipoic acid metabolism
77 mmu00790 Folate biosynthesis
78 mmu00830 Retinol metabolism
79 mmu00860 Porphyrin and chlorophyll metabolism
80 mmu00900 Terpenoid backbone biosynthesis
81 mmu00910 Nitrogen metabolism
82 mmu00920 Sulfur metabolism
83 mmu00970 Aminoacyl-tRNA biosynthesis
84 mmu00980 Metabolism of xenobiotics by cytochrome P450
85 mmu00982 Drug metabolism
86 mmu00983 Drug metabolism
87 mmu01040 Biosynthesis of unsaturated fatty acids
88 mmu01100 Metabolic pathways
89 mmu01200 Carbon metabolism
90 mmu01210 2-Oxocarboxylic acid metabolism
91 mmu01212 Fatty acid metabolism
92 mmu01230 Biosynthesis of amino acids
93 mmu01521 EGFR tyrosine kinase inhibitor resistance
94 mmu01522 Endocrine resistance
95 mmu01523 Antifolate resistance
96 mmu01524 Platinum drug resistance
97 mmu02010 ABC transporters
98 mmu03008 Ribosome biogenesis in eukaryotes
99 mmu03010 Ribosome
100 mmu03013 RNA transport
101 mmu03015 mRNA surveillance pathway
102 mmu03018 RNA degradation
103 mmu03020 RNA polymerase
104 mmu03022 Basal transcription factors
105 mmu03030 DNA replication
106 mmu03040 Spliceosome
107 mmu03050 Proteasome
108 mmu03060 Protein export
109 mmu03320 PPAR signaling pathway
110 mmu03410 Base excision repair
111 mmu03420 Nucleotide excision repair
112 mmu03430 Mismatch repair
113 mmu03440 Homologous recombination
114 mmu03450 Non-homologous end-joining
115 mmu03460 Fanconi anemia pathway
116 mmu04010 MAPK signaling pathway
117 mmu04012 ErbB signaling pathway
118 mmu04014 Ras signaling pathway
119 mmu04015 Rap1 signaling pathway
120 mmu04020 Calcium signaling pathway
121 mmu04022 cGMP-PKG signaling pathway
122 mmu04024 cAMP signaling pathway
123 mmu04060 Cytokine-cytokine receptor interaction
124 mmu04062 Chemokine signaling pathway
125 mmu04064 NF-kappa B signaling pathway
126 mmu04066 HIF-1 signaling pathway
127 mmu04068 FoxO signaling pathway
128 mmu04070 Phosphatidylinositol signaling system
129 mmu04071 Sphingolipid signaling pathway
130 mmu04072 Phospholipase D signaling pathway
131 mmu04080 Neuroactive ligand-receptor interaction
132 mmu04110 Cell cycle
133 mmu04114 Oocyte meiosis
134 mmu04115 p53 signaling pathway
135 mmu04120 Ubiquitin mediated proteolysis
136 mmu04122 Sulfur relay system
137 mmu04130 SNARE interactions in vesicular transport
138 mmu04136 Autophagy
139 mmu04137 Mitophagy
140 mmu04140 Autophagy
141 mmu04141 Protein processing in endoplasmic reticulum
142 mmu04142 Lysosome
143 mmu04144 Endocytosis
144 mmu04145 Phagosome
145 mmu04146 Peroxisome
146 mmu04150 mTOR signaling pathway
147 mmu04151 PI3K-Akt signaling pathway
148 mmu04152 AMPK signaling pathway
149 mmu04210 Apoptosis
150 mmu04211 Longevity regulating pathway
151 mmu04213 Longevity regulating pathway
152 mmu04215 Apoptosis
153 mmu04216 Ferroptosis
154 mmu04217 Necroptosis
155 mmu04218 Cellular senescence
156 mmu04260 Cardiac muscle contraction
157 mmu04261 Adrenergic signaling in cardiomyocytes
158 mmu04270 Vascular smooth muscle contraction
159 mmu04310 Wnt signaling pathway
160 mmu04330 Notch signaling pathway
161 mmu04340 Hedgehog signaling pathway
162 mmu04350 TGF-beta signaling pathway
163 mmu04360 Axon guidance
164 mmu04370 VEGF signaling pathway
165 mmu04371 Apelin signaling pathway
166 mmu04380 Osteoclast differentiation
167 mmu04390 Hippo signaling pathway
168 mmu04392 Hippo signaling pathway
169 mmu04510 Focal adhesion
170 mmu04512 ECM-receptor interaction
171 mmu04514 Cell adhesion molecules (CAMs)
172 mmu04520 Adherens junction
173 mmu04530 Tight junction
174 mmu04540 Gap junction
175 mmu04550 Signaling pathways regulating pluripotency of stem cells
176 mmu04610 Complement and coagulation cascades
177 mmu04611 Platelet activation
178 mmu04612 Antigen processing and presentation
179 mmu04614 Renin-angiotensin system
180 mmu04620 Toll-like receptor signaling pathway
181 mmu04621 NOD-like receptor signaling pathway
182 mmu04622 RIG-I-like receptor signaling pathway
183 mmu04623 Cytosolic DNA-sensing pathway
184 mmu04625 C-type lectin receptor signaling pathway
185 mmu04630 Jak-STAT signaling pathway
186 mmu04640 Hematopoietic cell lineage
187 mmu04650 Natural killer cell mediated cytotoxicity
188 mmu04657 IL-17 signaling pathway
189 mmu04658 Th1 and Th2 cell differentiation
190 mmu04659 Th17 cell differentiation
191 mmu04660 T cell receptor signaling pathway
192 mmu04662 B cell receptor signaling pathway
193 mmu04664 Fc epsilon RI signaling pathway
194 mmu04666 Fc gamma R-mediated phagocytosis
195 mmu04668 TNF signaling pathway
196 mmu04670 Leukocyte transendothelial migration
197 mmu04672 Intestinal immune network for IgA production
198 mmu04710 Circadian rhythm
199 mmu04713 Circadian entrainment
200 mmu04714 Thermogenesis
201 mmu04720 Long-term potentiation
202 mmu04721 Synaptic vesicle cycle
203 mmu04722 Neurotrophin signaling pathway
204 mmu04723 Retrograde endocannabinoid signaling
205 mmu04724 Glutamatergic synapse
206 mmu04725 Cholinergic synapse
207 mmu04726 Serotonergic synapse
208 mmu04727 GABAergic synapse
209 mmu04728 Dopaminergic synapse
210 mmu04730 Long-term depression
211 mmu04740 Olfactory transduction
212 mmu04742 Taste transduction
213 mmu04744 Phototransduction
214 mmu04750 Inflammatory mediator regulation of TRP channels
215 mmu04810 Regulation of actin cytoskeleton
216 mmu04910 Insulin signaling pathway
217 mmu04911 Insulin secretion
218 mmu04912 GnRH signaling pathway
219 mmu04913 Ovarian steroidogenesis
220 mmu04914 Progesterone-mediated oocyte maturation
221 mmu04915 Estrogen signaling pathway
222 mmu04916 Melanogenesis
223 mmu04917 Prolactin signaling pathway
224 mmu04918 Thyroid hormone synthesis
225 mmu04919 Thyroid hormone signaling pathway
226 mmu04920 Adipocytokine signaling pathway
227 mmu04921 Oxytocin signaling pathway
228 mmu04922 Glucagon signaling pathway
229 mmu04923 Regulation of lipolysis in adipocytes
230 mmu04924 Renin secretion
231 mmu04925 Aldosterone synthesis and secretion
232 mmu04926 Relaxin signaling pathway
233 mmu04927 Cortisol synthesis and secretion
234 mmu04928 Parathyroid hormone synthesis, secretion and action
235 mmu04930 Type II diabetes mellitus
236 mmu04931 Insulin resistance
237 mmu04932 Non-alcoholic fatty liver disease (NAFLD)
238 mmu04933 AGE-RAGE signaling pathway in diabetic complications
239 mmu04934 Cushing's syndrome
240 mmu04940 Type I diabetes mellitus
241 mmu04950 Maturity onset diabetes of the young
242 mmu04960 Aldosterone-regulated sodium reabsorption
243 mmu04961 Endocrine and other factor-regulated calcium reabsorption
244 mmu04962 Vasopressin-regulated water reabsorption
245 mmu04964 Proximal tubule bicarbonate reclamation
246 mmu04966 Collecting duct acid secretion
247 mmu04970 Salivary secretion
248 mmu04971 Gastric acid secretion
249 mmu04972 Pancreatic secretion
250 mmu04973 Carbohydrate digestion and absorption
251 mmu04974 Protein digestion and absorption
252 mmu04975 Fat digestion and absorption
253 mmu04976 Bile secretion
254 mmu04977 Vitamin digestion and absorption
255 mmu04978 Mineral absorption
256 mmu04979 Cholesterol metabolism
257 mmu05010 Alzheimer's disease
258 mmu05012 Parkinson's disease
259 mmu05014 Amyotrophic lateral sclerosis (ALS)
260 mmu05016 Huntington's disease
261 mmu05020 Prion diseases
262 mmu05030 Cocaine addiction
263 mmu05031 Amphetamine addiction
264 mmu05032 Morphine addiction
265 mmu05033 Nicotine addiction
266 mmu05034 Alcoholism
267 mmu05100 Bacterial invasion of epithelial cells
268 mmu05132 Salmonella infection
269 mmu05133 Pertussis
270 mmu05134 Legionellosis
271 mmu05140 Leishmaniasis
272 mmu05142 Chagas disease (American trypanosomiasis)
273 mmu05143 African trypanosomiasis
274 mmu05144 Malaria
275 mmu05145 Toxoplasmosis
276 mmu05146 Amoebiasis
277 mmu05150 Staphylococcus aureus infection
278 mmu05152 Tuberculosis
279 mmu05160 Hepatitis C
280 mmu05161 Hepatitis B
281 mmu05162 Measles
282 mmu05163 Human cytomegalovirus infection
283 mmu05164 Influenza A
284 mmu05165 Human papillomavirus infection
285 mmu05166 HTLV-I infection
286 mmu05167 Kaposi's sarcoma-associated herpesvirus infection
287 mmu05168 Herpes simplex infection
288 mmu05169 Epstein-Barr virus infection
289 mmu05200 Pathways in cancer
290 mmu05202 Transcriptional misregulation in cancer
291 mmu05203 Viral carcinogenesis
292 mmu05204 Chemical carcinogenesis
293 mmu05205 Proteoglycans in cancer
294 mmu05206 MicroRNAs in cancer
295 mmu05210 Colorectal cancer
296 mmu05211 Renal cell carcinoma
297 mmu05212 Pancreatic cancer
298 mmu05213 Endometrial cancer
299 mmu05214 Glioma
300 mmu05215 Prostate cancer
301 mmu05216 Thyroid cancer
302 mmu05217 Basal cell carcinoma
303 mmu05218 Melanoma
304 mmu05219 Bladder cancer
305 mmu05220 Chronic myeloid leukemia
306 mmu05221 Acute myeloid leukemia
307 mmu05222 Small cell lung cancer
308 mmu05223 Non-small cell lung cancer
309 mmu05224 Breast cancer
310 mmu05225 Hepatocellular carcinoma
311 mmu05226 Gastric cancer
312 mmu05230 Central carbon metabolism in cancer
313 mmu05231 Choline metabolism in cancer
314 mmu05310 Asthma
315 mmu05320 Autoimmune thyroid disease
316 mmu05321 Inflammatory bowel disease (IBD)
317 mmu05322 Systemic lupus erythematosus
318 mmu05323 Rheumatoid arthritis
319 mmu05330 Allograft rejection
320 mmu05332 Graft-versus-host disease
321 mmu05340 Primary immunodeficiency
322 mmu05410 Hypertrophic cardiomyopathy (HCM)
323 mmu05412 Arrhythmogenic right ventricular cardiomyopathy (ARVC)
324 mmu05414 Dilated cardiomyopathy (DCM)
325 mmu05416 Viral myocarditis
326 mmu05418 Fluid shear stress and atherosclerosis