Mercurial > repos > proteore > proteore_pathview_mapping

comparison hsa_pathways.tsv.sample @ 2:db86d160bcba draft

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planemo upload commit e3908c09d490dd7180d715c90184ba4029544524-dirty
author proteore
date Fri, 24 Aug 2018 05:19:09 -0400
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1:59c96f071853 2:db86d160bcba
1 #value name
2 hsa00010 Glycolysis / Gluconeogenesis
3 hsa00020 Citrate cycle (TCA cycle)
4 hsa00030 Pentose phosphate pathway
5 hsa00040 Pentose and glucuronate interconversions
6 hsa00051 Fructose and mannose metabolism
7 hsa00052 Galactose metabolism
8 hsa00053 Ascorbate and aldarate metabolism
9 hsa00061 Fatty acid biosynthesis
10 hsa00062 Fatty acid elongation
11 hsa00071 Fatty acid degradation
12 hsa00072 Synthesis and degradation of ketone bodies
13 hsa00100 Steroid biosynthesis
14 hsa00120 Primary bile acid biosynthesis
15 hsa00130 Ubiquinone and other terpenoid-quinone biosynthesis
16 hsa00140 Steroid hormone biosynthesis
17 hsa00190 Oxidative phosphorylation
18 hsa00220 Arginine biosynthesis
19 hsa00230 Purine metabolism
20 hsa00232 Caffeine metabolism
21 hsa00240 Pyrimidine metabolism
22 hsa00250 Alanine, aspartate and glutamate metabolism
23 hsa00260 Glycine, serine and threonine metabolism
24 hsa00270 Cysteine and methionine metabolism
25 hsa00280 Valine, leucine and isoleucine degradation
26 hsa00290 Valine, leucine and isoleucine biosynthesis
27 hsa00310 Lysine degradation
28 hsa00330 Arginine and proline metabolism
29 hsa00340 Histidine metabolism
30 hsa00350 Tyrosine metabolism
31 hsa00360 Phenylalanine metabolism
32 hsa00380 Tryptophan metabolism
33 hsa00400 Phenylalanine, tyrosine and tryptophan biosynthesis
34 hsa00410 beta-Alanine metabolism
35 hsa00430 Taurine and hypotaurine metabolism
36 hsa00440 Phosphonate and phosphinate metabolism
37 hsa00450 Selenocompound metabolism
38 hsa00471 D-Glutamine and D-glutamate metabolism
39 hsa00472 D-Arginine and D-ornithine metabolism
40 hsa00480 Glutathione metabolism
41 hsa00500 Starch and sucrose metabolism
42 hsa00510 N-Glycan biosynthesis
43 hsa00511 Other glycan degradation
44 hsa00512 Mucin type O-glycan biosynthesis
45 hsa00514 Other types of O-glycan biosynthesis
46 hsa00515 Mannose type O-glycan biosynthesis
47 hsa00520 Amino sugar and nucleotide sugar metabolism
48 hsa00524 Neomycin, kanamycin and gentamicin biosynthesis
49 hsa00531 Glycosaminoglycan degradation
50 hsa00532 Glycosaminoglycan biosynthesis
51 hsa00533 Glycosaminoglycan biosynthesis
52 hsa00534 Glycosaminoglycan biosynthesis
53 hsa00561 Glycerolipid metabolism
54 hsa00562 Inositol phosphate metabolism
55 hsa00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
56 hsa00564 Glycerophospholipid metabolism
57 hsa00565 Ether lipid metabolism
58 hsa00590 Arachidonic acid metabolism
59 hsa00591 Linoleic acid metabolism
60 hsa00592 alpha-Linolenic acid metabolism
61 hsa00600 Sphingolipid metabolism
62 hsa00601 Glycosphingolipid biosynthesis
63 hsa00603 Glycosphingolipid biosynthesis
64 hsa00604 Glycosphingolipid biosynthesis
65 hsa00620 Pyruvate metabolism
66 hsa00630 Glyoxylate and dicarboxylate metabolism
67 hsa00640 Propanoate metabolism
68 hsa00650 Butanoate metabolism
69 hsa00670 One carbon pool by folate
70 hsa00730 Thiamine metabolism
71 hsa00740 Riboflavin metabolism
72 hsa00750 Vitamin B6 metabolism
73 hsa00760 Nicotinate and nicotinamide metabolism
74 hsa00770 Pantothenate and CoA biosynthesis
75 hsa00780 Biotin metabolism
76 hsa00785 Lipoic acid metabolism
77 hsa00790 Folate biosynthesis
78 hsa00830 Retinol metabolism
79 hsa00860 Porphyrin and chlorophyll metabolism
80 hsa00900 Terpenoid backbone biosynthesis
81 hsa00910 Nitrogen metabolism
82 hsa00920 Sulfur metabolism
83 hsa00970 Aminoacyl-tRNA biosynthesis
84 hsa00980 Metabolism of xenobiotics by cytochrome P450
85 hsa00982 Drug metabolism
86 hsa00983 Drug metabolism
87 hsa01040 Biosynthesis of unsaturated fatty acids
88 hsa01100 Metabolic pathways
89 hsa01200 Carbon metabolism
90 hsa01210 2-Oxocarboxylic acid metabolism
91 hsa01212 Fatty acid metabolism
92 hsa01230 Biosynthesis of amino acids
93 hsa01521 EGFR tyrosine kinase inhibitor resistance
94 hsa01522 Endocrine resistance
95 hsa01523 Antifolate resistance
96 hsa01524 Platinum drug resistance
97 hsa02010 ABC transporters
98 hsa03008 Ribosome biogenesis in eukaryotes
99 hsa03010 Ribosome
100 hsa03013 RNA transport
101 hsa03015 mRNA surveillance pathway
102 hsa03018 RNA degradation
103 hsa03020 RNA polymerase
104 hsa03022 Basal transcription factors
105 hsa03030 DNA replication
106 hsa03040 Spliceosome
107 hsa03050 Proteasome
108 hsa03060 Protein export
109 hsa03320 PPAR signaling pathway
110 hsa03410 Base excision repair
111 hsa03420 Nucleotide excision repair
112 hsa03430 Mismatch repair
113 hsa03440 Homologous recombination
114 hsa03450 Non-homologous end-joining
115 hsa03460 Fanconi anemia pathway
116 hsa04010 MAPK signaling pathway
117 hsa04012 ErbB signaling pathway
118 hsa04014 Ras signaling pathway
119 hsa04015 Rap1 signaling pathway
120 hsa04020 Calcium signaling pathway
121 hsa04022 cGMP-PKG signaling pathway
122 hsa04024 cAMP signaling pathway
123 hsa04060 Cytokine-cytokine receptor interaction
124 hsa04062 Chemokine signaling pathway
125 hsa04064 NF-kappa B signaling pathway
126 hsa04066 HIF-1 signaling pathway
127 hsa04068 FoxO signaling pathway
128 hsa04070 Phosphatidylinositol signaling system
129 hsa04071 Sphingolipid signaling pathway
130 hsa04072 Phospholipase D signaling pathway
131 hsa04080 Neuroactive ligand-receptor interaction
132 hsa04110 Cell cycle
133 hsa04114 Oocyte meiosis
134 hsa04115 p53 signaling pathway
135 hsa04120 Ubiquitin mediated proteolysis
136 hsa04122 Sulfur relay system
137 hsa04130 SNARE interactions in vesicular transport
138 hsa04136 Autophagy
139 hsa04137 Mitophagy
140 hsa04140 Autophagy
141 hsa04141 Protein processing in endoplasmic reticulum
142 hsa04142 Lysosome
143 hsa04144 Endocytosis
144 hsa04145 Phagosome
145 hsa04146 Peroxisome
146 hsa04150 mTOR signaling pathway
147 hsa04151 PI3K-Akt signaling pathway
148 hsa04152 AMPK signaling pathway
149 hsa04210 Apoptosis
150 hsa04211 Longevity regulating pathway
151 hsa04213 Longevity regulating pathway
152 hsa04215 Apoptosis
153 hsa04216 Ferroptosis
154 hsa04217 Necroptosis
155 hsa04218 Cellular senescence
156 hsa04260 Cardiac muscle contraction
157 hsa04261 Adrenergic signaling in cardiomyocytes
158 hsa04270 Vascular smooth muscle contraction
159 hsa04310 Wnt signaling pathway
160 hsa04330 Notch signaling pathway
161 hsa04340 Hedgehog signaling pathway
162 hsa04350 TGF-beta signaling pathway
163 hsa04360 Axon guidance
164 hsa04370 VEGF signaling pathway
165 hsa04371 Apelin signaling pathway
166 hsa04380 Osteoclast differentiation
167 hsa04390 Hippo signaling pathway
168 hsa04392 Hippo signaling pathway
169 hsa04510 Focal adhesion
170 hsa04512 ECM-receptor interaction
171 hsa04514 Cell adhesion molecules (CAMs)
172 hsa04520 Adherens junction
173 hsa04530 Tight junction
174 hsa04540 Gap junction
175 hsa04550 Signaling pathways regulating pluripotency of stem cells
176 hsa04610 Complement and coagulation cascades
177 hsa04611 Platelet activation
178 hsa04612 Antigen processing and presentation
179 hsa04614 Renin-angiotensin system
180 hsa04620 Toll-like receptor signaling pathway
181 hsa04621 NOD-like receptor signaling pathway
182 hsa04622 RIG-I-like receptor signaling pathway
183 hsa04623 Cytosolic DNA-sensing pathway
184 hsa04625 C-type lectin receptor signaling pathway
185 hsa04630 Jak-STAT signaling pathway
186 hsa04640 Hematopoietic cell lineage
187 hsa04650 Natural killer cell mediated cytotoxicity
188 hsa04657 IL-17 signaling pathway
189 hsa04658 Th1 and Th2 cell differentiation
190 hsa04659 Th17 cell differentiation
191 hsa04660 T cell receptor signaling pathway
192 hsa04662 B cell receptor signaling pathway
193 hsa04664 Fc epsilon RI signaling pathway
194 hsa04666 Fc gamma R-mediated phagocytosis
195 hsa04668 TNF signaling pathway
196 hsa04670 Leukocyte transendothelial migration
197 hsa04672 Intestinal immune network for IgA production
198 hsa04710 Circadian rhythm
199 hsa04713 Circadian entrainment
200 hsa04714 Thermogenesis
201 hsa04720 Long-term potentiation
202 hsa04721 Synaptic vesicle cycle
203 hsa04722 Neurotrophin signaling pathway
204 hsa04723 Retrograde endocannabinoid signaling
205 hsa04724 Glutamatergic synapse
206 hsa04725 Cholinergic synapse
207 hsa04726 Serotonergic synapse
208 hsa04727 GABAergic synapse
209 hsa04728 Dopaminergic synapse
210 hsa04730 Long-term depression
211 hsa04740 Olfactory transduction
212 hsa04742 Taste transduction
213 hsa04744 Phototransduction
214 hsa04750 Inflammatory mediator regulation of TRP channels
215 hsa04810 Regulation of actin cytoskeleton
216 hsa04910 Insulin signaling pathway
217 hsa04911 Insulin secretion
218 hsa04912 GnRH signaling pathway
219 hsa04913 Ovarian steroidogenesis
220 hsa04914 Progesterone-mediated oocyte maturation
221 hsa04915 Estrogen signaling pathway
222 hsa04916 Melanogenesis
223 hsa04917 Prolactin signaling pathway
224 hsa04918 Thyroid hormone synthesis
225 hsa04919 Thyroid hormone signaling pathway
226 hsa04920 Adipocytokine signaling pathway
227 hsa04921 Oxytocin signaling pathway
228 hsa04922 Glucagon signaling pathway
229 hsa04923 Regulation of lipolysis in adipocytes
230 hsa04924 Renin secretion
231 hsa04925 Aldosterone synthesis and secretion
232 hsa04926 Relaxin signaling pathway
233 hsa04927 Cortisol synthesis and secretion
234 hsa04928 Parathyroid hormone synthesis, secretion and action
235 hsa04930 Type II diabetes mellitus
236 hsa04931 Insulin resistance
237 hsa04932 Non-alcoholic fatty liver disease (NAFLD)
238 hsa04933 AGE-RAGE signaling pathway in diabetic complications
239 hsa04934 Cushing's syndrome
240 hsa04940 Type I diabetes mellitus
241 hsa04950 Maturity onset diabetes of the young
242 hsa04960 Aldosterone-regulated sodium reabsorption
243 hsa04961 Endocrine and other factor-regulated calcium reabsorption
244 hsa04962 Vasopressin-regulated water reabsorption
245 hsa04964 Proximal tubule bicarbonate reclamation
246 hsa04966 Collecting duct acid secretion
247 hsa04970 Salivary secretion
248 hsa04971 Gastric acid secretion
249 hsa04972 Pancreatic secretion
250 hsa04973 Carbohydrate digestion and absorption
251 hsa04974 Protein digestion and absorption
252 hsa04975 Fat digestion and absorption
253 hsa04976 Bile secretion
254 hsa04977 Vitamin digestion and absorption
255 hsa04978 Mineral absorption
256 hsa04979 Cholesterol metabolism
257 hsa05010 Alzheimer's disease
258 hsa05012 Parkinson's disease
259 hsa05014 Amyotrophic lateral sclerosis (ALS)
260 hsa05016 Huntington's disease
261 hsa05020 Prion diseases
262 hsa05030 Cocaine addiction
263 hsa05031 Amphetamine addiction
264 hsa05032 Morphine addiction
265 hsa05033 Nicotine addiction
266 hsa05034 Alcoholism
267 hsa05100 Bacterial invasion of epithelial cells
268 hsa05110 Vibrio cholerae infection
269 hsa05120 Epithelial cell signaling in Helicobacter pylori infection
270 hsa05130 Pathogenic Escherichia coli infection
271 hsa05131 Shigellosis
272 hsa05132 Salmonella infection
273 hsa05133 Pertussis
274 hsa05134 Legionellosis
275 hsa05140 Leishmaniasis
276 hsa05142 Chagas disease (American trypanosomiasis)
277 hsa05143 African trypanosomiasis
278 hsa05144 Malaria
279 hsa05145 Toxoplasmosis
280 hsa05146 Amoebiasis
281 hsa05150 Staphylococcus aureus infection
282 hsa05152 Tuberculosis
283 hsa05160 Hepatitis C
284 hsa05161 Hepatitis B
285 hsa05162 Measles
286 hsa05163 Human cytomegalovirus infection
287 hsa05164 Influenza A
288 hsa05165 Human papillomavirus infection
289 hsa05166 HTLV-I infection
290 hsa05167 Kaposi's sarcoma-associated herpesvirus infection
291 hsa05168 Herpes simplex infection
292 hsa05169 Epstein-Barr virus infection
293 hsa05200 Pathways in cancer
294 hsa05202 Transcriptional misregulation in cancer
295 hsa05203 Viral carcinogenesis
296 hsa05204 Chemical carcinogenesis
297 hsa05205 Proteoglycans in cancer
298 hsa05206 MicroRNAs in cancer
299 hsa05210 Colorectal cancer
300 hsa05211 Renal cell carcinoma
301 hsa05212 Pancreatic cancer
302 hsa05213 Endometrial cancer
303 hsa05214 Glioma
304 hsa05215 Prostate cancer
305 hsa05216 Thyroid cancer
306 hsa05217 Basal cell carcinoma
307 hsa05218 Melanoma
308 hsa05219 Bladder cancer
309 hsa05220 Chronic myeloid leukemia
310 hsa05221 Acute myeloid leukemia
311 hsa05222 Small cell lung cancer
312 hsa05223 Non-small cell lung cancer
313 hsa05224 Breast cancer
314 hsa05225 Hepatocellular carcinoma
315 hsa05226 Gastric cancer
316 hsa05230 Central carbon metabolism in cancer
317 hsa05231 Choline metabolism in cancer
318 hsa05310 Asthma
319 hsa05320 Autoimmune thyroid disease
320 hsa05321 Inflammatory bowel disease (IBD)
321 hsa05322 Systemic lupus erythematosus
322 hsa05323 Rheumatoid arthritis
323 hsa05330 Allograft rejection
324 hsa05332 Graft-versus-host disease
325 hsa05340 Primary immunodeficiency
326 hsa05410 Hypertrophic cardiomyopathy (HCM)
327 hsa05412 Arrhythmogenic right ventricular cardiomyopathy (ARVC)
328 hsa05414 Dilated cardiomyopathy (DCM)
329 hsa05416 Viral myocarditis
330 hsa05418 Fluid shear stress and atherosclerosis