Mercurial > repos > proteore > proteore_pathview_mapping

comparison kegg_pathways_visualization.xml @ 15:da82872f5c80 draft

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planemo upload commit 63302cb49d4f0f4dbc9ae141d20704822588f54e-dirty
author proteore
date Mon, 12 Nov 2018 10:54:25 -0500
parents be8115c73b0d
children 682041ae727d
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14:be8115c73b0d 15:da82872f5c80
1 <tool id="kegg_pathways_visualization" name="KEGG pathways" version="2018.11.09.1"> 1 <tool id="kegg_pathways_visualization" name="KEGG pathways" version="2018.11.12">
2 <description>map visualisation (PathView)</description> 2 <description>map visualisation (PathView)</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.18.0">bioconductor-pathview</requirement> 4 <requirement type="package" version="1.18.0">bioconductor-pathview</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
146 </when> 146 </when>
147 </conditional> 147 </conditional>
148 <param name="id_type" type="select" label="Select your identifiers type :"> 148 <param name="id_type" type="select" label="Select your identifiers type :">
149 <option value="uniprotID">Uniprot Accession number</option> 149 <option value="uniprotID">Uniprot Accession number</option>
150 <option value="geneID">Entrez gene ID</option> 150 <option value="geneID">Entrez gene ID</option>
151 <!--option value="keggid">KEGG genes ID</option--> 151 <option value="keggid">KEGG genes ID</option>
152 </param> 152 </param>
153 <conditional name="input" > 153 <conditional name="input" >
154 <param name="ids" type="select" label="Enter your identifiers (Uniprot AC or Entrez gene ID)" help="Copy/paste or ID list from a file (e.g. table)" > 154 <param name="ids" type="select" label="Enter your identifiers (Uniprot AC or Entrez gene ID)" help="Copy/paste or ID list from a file (e.g. table)" >
155 <option value="text">Copy/paste your identifiers</option> 155 <option value="text">Copy/paste your identifiers</option>
156 <option value="file" selected="true">Input file containing your identifiers</option> 156 <option value="file" selected="true">Input file containing your identifiers</option>