# HG changeset patch
# User proteore
# Date 1578474221 0
# Node ID 9ac0ade20b3f3f5cda80a960da09c11eed79c006
# Parent  ab697ebe0f41d07654c091780551f53ffddcab22
"planemo upload commit ba867b8fa3352695fbda1ae764407f363ee79a50-dirty"

diff -r ab697ebe0f41 -r 9ac0ade20b3f kegg_maps_visualization.R
--- a/kegg_maps_visualization.R	Mon Jan 06 16:26:09 2020 +0000
+++ b/kegg_maps_visualization.R	Wed Jan 08 09:03:41 2020 +0000
@@ -238,7 +238,7 @@
     pathways_file = read_file(args$pathways_input,header2)
     ids <- sapply(rapply(strsplit(clean_bad_character(pathways_file[,pathway_col]),","),c), function(x) remove_kegg_prefix(x),USE.NAMES = FALSE)
   }
-  if (args$native_kegg) { ids <- ids[-grep("04215",ids)] }
+  if (args$native_kegg) { ids <- ids[ids != "04215"] }
   pathways_list <- read_file(args$pathways_list,F)
   if (!is.null(args$id_list)) {
     id_list <- get_list_from_cp(args$id_list)
diff -r ab697ebe0f41 -r 9ac0ade20b3f kegg_maps_visualization.xml
--- a/kegg_maps_visualization.xml	Mon Jan 06 16:26:09 2020 +0000
+++ b/kegg_maps_visualization.xml	Wed Jan 08 09:03:41 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="kegg_maps_visualization" name="Pathways visualization" version="2020.01.06">
+<tool id="kegg_maps_visualization" name="Pathways visualization" version="2020.01.08">
     <description>of (differentially expressed) genes/proteins [KEGG]</description>
     <requirements>
         <requirement type="package" version="3.6.2" >R</requirement>