Mercurial > repos > proteore > proteore_maps_visualization

comparison kegg_maps_visualization.xml @ 8:ab697ebe0f41 draft

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"planemo upload commit 7e03a2492a127f75ab5d896a8a9dd21d64f7890e-dirty"
author proteore
date Mon, 06 Jan 2020 16:26:09 +0000
parents 940d787535a7
children 9ac0ade20b3f
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7:940d787535a7 8:ab697ebe0f41
1 <tool id="kegg_maps_visualization" name="Pathways visualization" version="2019.06.27.1"> 1 <tool id="kegg_maps_visualization" name="Pathways visualization" version="2020.01.06">
2 <description>of (differentially expressed) genes/proteins [KEGG]</description> 2 <description>of (differentially expressed) genes/proteins [KEGG]</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.18.0">bioconductor-pathview</requirement> 4 <requirement type="package" version="3.6.2" >R</requirement>
5 <requirement type="package" version="1.18.0">bioconductor-keggrest</requirement> 5 <requirement type="package" version="1.26.0">bioconductor-pathview</requirement>
6 <requirement type="package" version="1.26.0">bioconductor-keggrest</requirement>
6 </requirements> 7 </requirements>
7 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
8 Rscript $__tool_directory__/kegg_maps_visualization.R 9 Rscript $__tool_directory__/kegg_maps_visualization.R
9 #if $input.ids == "text" 10 #if $input.ids == "text"
10 --id_list="$input.txt" 11 --id_list="$input.txt"