Mercurial > repos > proteore > proteore_maps_visualization

comparison kegg_maps_visualization.xml @ 7:940d787535a7 draft

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planemo upload commit f5fa8743c0dd564b1ff35ba7fafdd8ebacce6776-dirty
author proteore
date Thu, 27 Jun 2019 07:45:25 -0400
parents 005221a20848
children ab697ebe0f41
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6:005221a20848 7:940d787535a7
1 <tool id="kegg_maps_visualization" name="Pathways visualization" version="2019.06.27"> 1 <tool id="kegg_maps_visualization" name="Pathways visualization" version="2019.06.27.1">
2 <description>of (differentially expressed) genes/proteins [KEGG]</description> 2 <description>of (differentially expressed) genes/proteins [KEGG]</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.18.0">bioconductor-pathview</requirement> 4 <requirement type="package" version="1.18.0">bioconductor-pathview</requirement>
5 <requirement type="package" version="1.18.0">bioconductor-keggrest</requirement> 5 <requirement type="package" version="1.18.0">bioconductor-keggrest</requirement>
6 </requirements> 6 </requirements>
36 --output="$text_output" 36 --output="$text_output"
37 37
38 ]]></command> 38 ]]></command>
39 <inputs> 39 <inputs>
40 <!--section name="pathways_section" title="Pathways" expanded="True"--> 40 <!--section name="pathways_section" title="Pathways" expanded="True"-->
41 <conditional name="species (human, mouse, rat)"> 41 <conditional name="species">
42 <param name="ref_file" type="select" label="Species" > 42 <param name="ref_file" type="select" label="Species (human, mouse, rat)" >
43 <option value="hsa">Human (Homo sapiens)</option> 43 <option value="hsa">Human (Homo sapiens)</option>
44 <option value="mmu">Mouse (Mus musculus)</option> 44 <option value="mmu">Mouse (Mus musculus)</option>
45 <option value="rno">Rat (Rattus norvegicus)</option> 45 <option value="rno">Rat (Rattus norvegicus)</option>
46 </param> 46 </param>
47 <when value="hsa"> 47 <when value="hsa">