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author proteore
date Wed, 10 Jul 2019 10:19:48 -0400
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+        **Description**
+
+This tool allows you to get SRM/MRM informations from Uniprot-AC IDs.
+
+-----
+
+**Input**
+
+A list of IDs (entered in a copy/paste mode) or a single-column file, the tool will then return a file containing the wanted protein features. 
+If your input is a multiple-column file, the mapped IDs column(s) will be added at the end of the input file.
+
+.. class:: warningmark
+
+Accession numbers with an hyphen ("-") that normally correspond to isoform are not considered as similar to its canonical form.
+
+.. class:: warningmark
+
+In copy/paste mode, the number of IDs considered in input is limited to 5000.
+
+-----
+
+**Parameters**
+
+- **Enter IDS:** enter your Uniprot-AC from a file or a copy paste
+- **Release:** choose the release you want to use for retrieving protein sequences / features 
+- **Protein sequence/Features:** choose proteins features you want to retrieve
+
+-----
+
+**Output**
+
+A text file containing the selected protein features (in addition to the original column(s) provided).
+Please, note that a "NA" is returned when there is no match between a source ID and SRM/MRM source file.
+
+-----
+
+**Data sources (release date)**
+
+This tool is using the following source file:
+
+- `HumanSRMAtlasPeptidesFinalAnnotated (2016-04) <http://www.srmatlas.org/downloads/HumanSRMAtlasPeptidesFinalAnnotated.xlsx>`_.
+
+-----
+
+.. class:: infomark
+
+**Authors**
+
+David Christiany, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
+
+Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform, FR
+
+This work has been partially funded through the French National Agency for Research (ANR) IFB project.
+
+Help: contact@proteore.org for any questions or concerns about this tool.
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