# HG changeset patch
# User proteore
# Date 1579706771 0
# Node ID 07858c6dbbffc7ca79c287e05565451299cbbeb6
# Parent  28d51adf829231acbafb6266b1ccb3176d58f096
"planemo upload commit 330a2527c7e20c4d189a0f1b7a184a8c4610b4b6-dirty"

diff -r 28d51adf8292 -r 07858c6dbbff add_expression_HPA.R
--- a/add_expression_HPA.R	Wed Jan 22 15:20:35 2020 +0000
+++ b/add_expression_HPA.R	Wed Jan 22 15:26:11 2020 +0000
@@ -1,11 +1,7 @@
 # Read file and return file content as data.frame
 read_file <- function(path,header){
-  file <- try(read.csv(path,header=header, sep="\t",stringsAsFactors = FALSE, quote="\"", check.names = F),silent=TRUE)
-  if (inherits(file,"try-error")){
-    stop("File not found !")
-  }else{
-    return(file)
-  }
+  file <- read.csv(path,header=header, sep="\t",stringsAsFactors = FALSE, quote="\"", check.names = F)
+  return(file)
 }
 
 #convert a string to boolean
@@ -175,8 +171,7 @@
   check_ensembl_geneids(ids)
 
   # Read protein atlas
-  protein_atlas = args$atlas
-  protein_atlas = read_file(protein_atlas, T)
+  protein_atlas = read_file(args$atlas, T)
 
   # Add expression
   output = args$output
diff -r 28d51adf8292 -r 07858c6dbbff add_expression_data.xml
--- a/add_expression_data.xml	Wed Jan 22 15:20:35 2020 +0000
+++ b/add_expression_data.xml	Wed Jan 22 15:26:11 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="rna_abbased_data" name="Add expression data" version="2020.01.22.2">
+<tool id="rna_abbased_data" name="Add expression data" version="2020.01.22.3">
 <description> (RNAseq or Immuno-assays)[Human Protein Atlas]
 </description>
 <requirements>