--- a/add_expression_data.xml	Wed Jan 22 15:33:21 2020 +0000
+++ b/add_expression_data.xml	Thu Jan 23 10:44:39 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="rna_abbased_data" name="Add expression data" version="2020.01.22.4">
+<tool id="rna_abbased_data" name="Add expression data" version="2020.01.23">
 <description> (RNAseq or Immuno-assays)[Human Protein Atlas]
 </description>
 <requirements>
@@ -23,9 +23,9 @@
     #end if
 
     #if "protein_atlas" in str($ref_file).split("/")
-    --hpa_ref="$ref_file"
+    --atlas="$ref_file"
     #else 
-    --hpa_ref="$__tool_directory__/$ref_file"
+    --atlasf="$__tool_directory__/$ref_file"
     #end if
 
 ]]></command>
@@ -67,12 +67,12 @@
           <option value="Gene description" selected="false">Gene description</option>
           <option value="Evidence">Evidence (at protein level, at transcript level or no evidence)</option>
           <option value="Antibody">Antibody reference</option>
-          <option value="RNA tissue category">RNA tissue category</option>
- 		      <option value="Reliability (IH)">IH detection level</option>
+          <option value="RNA tissue specificity">RNA tissue category</option>
+ 		  <option value="Reliability (IH)">IH detection level</option>
           <option value="Reliability (IF)">IF detection level</option>
           <option value="Subcellular location">Subcellular location</option>
-          <option value="RNA TS TPM">RNA tissue specificity abundance in 'Transcript Per Million'</option>
-          <option value="TPM max in non-specific">RNA non-specific tissue abundance in 'Transcript Per Million'</option>
+          <option value="RNA tissue specific NX">RNA tissue specificity abundance in 'Transcript Per Million'</option>
+          <option value="TPM max in non-specific">RNA non-specific tissue abundance in 'Transcript Per Million' (only for 23/10/2018 release)</option>
     </param>
   </section>