Mercurial > repos > proteore > proteore_expression_rnaseq_abbased

comparison add_expression_HPA.R @ 7:fda784211e3a draft

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"planemo upload commit 330a2527c7e20c4d189a0f1b7a184a8c4610b4b6-dirty"
author proteore
date Wed, 22 Jan 2020 14:59:04 +0000
parents ea59f5750c51
children 28d51adf8292
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6:ea59f5750c51 7:fda784211e3a
173 ids = ids[which(!is.na(ids))] 173 ids = ids[which(!is.na(ids))]
174 } 174 }
175 check_ensembl_geneids(ids) 175 check_ensembl_geneids(ids)
176 176
177 # Read protein atlas 177 # Read protein atlas
178 protein_atlas = args$atlas 178 protein_atlas = read_file(args$atlas, T)
179 protein_atlas = read_file(protein_atlas, T)
180 179
181 # Add expression 180 # Add expression
182 output = args$output 181 output = args$output
183 options = strsplit(args$select, ",")[[1]] 182 options = strsplit(args$select, ",")[[1]]
184 res = add_expression(ids, protein_atlas, options) 183 res = add_expression(ids, protein_atlas, options)