Mercurial > repos > proteore > proteore_expression_levels_by_tissue
comparison get_expression_profiles.xml @ 6:1c3a5ceab3cd draft
planemo upload commit bb113d19d3a756f70784e6a1433902888686ed96-dirty
| author | proteore |
|---|---|
| date | Fri, 17 May 2019 04:56:57 -0400 |
| parents | b5be6d94f2a1 |
| children | 6a9db2cc54de |
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| 5:b5be6d94f2a1 | 6:1c3a5ceab3cd |
|---|---|
| 1 <tool id="sel_ann_hpa" name="Get expression profiles" version="2019.05.16"> | 1 <tool id="sel_ann_hpa" name="Get expression profiles" version="2019.05.17"> |
| 2 <description>by (normal or tumor) tissue/cell type [Human Protein Atlas] | 2 <description>by (normal or tumor) tissue/cell type [Human Protein Atlas] |
| 3 </description> | 3 </description> |
| 4 <requirements> | 4 <requirements> |
| 5 </requirements> | 5 </requirements> |
| 6 <stdio> | 6 <stdio> |
| 67 <option value="normal">Human Normal Tissue</option> | 67 <option value="normal">Human Normal Tissue</option> |
| 68 <option value="tumor">Human Tumor Tissue</option> | 68 <option value="tumor">Human Tumor Tissue</option> |
| 69 </param> | 69 </param> |
| 70 <when value="normal"> | 70 <when value="normal"> |
| 71 <param name="proteinatlas" type="select" label="Normal tissue HPA version" > | 71 <param name="proteinatlas" type="select" label="Normal tissue HPA version" > |
| 72 <options from_data_table="proteore_protein_atlas_normal_tissue"/> | 72 <options from_data_table="proteore_protein_atlas_normal_tissue"> |
| 73 <filter type="sort_by" column="0"/> | |
| 74 </options> | |
| 73 </param> | 75 </param> |
| 74 <param name="normal_tissue" type="select" label="Select tissue(s)" multiple="True" display="checkboxes" optional="False"> | 76 <param name="normal_tissue" type="select" label="Select tissue(s)" multiple="True" display="checkboxes" optional="False"> |
| 75 <option value="adrenal gland" >Adrenal gland</option> | 77 <option value="adrenal gland" >Adrenal gland</option> |
| 76 <option value="appendix" >Appendix</option> | 78 <option value="appendix" >Appendix</option> |
| 77 <option value="bone marrow" >Bone marrow</option> | 79 <option value="bone marrow" >Bone marrow</option> |
| 134 <option value="Uncertain">Uncertain</option> | 136 <option value="Uncertain">Uncertain</option> |
| 135 </param> | 137 </param> |
| 136 </when> | 138 </when> |
| 137 <when value="tumor"> | 139 <when value="tumor"> |
| 138 <param name="proteinatlas" type="select" label="Tumor tissue HPA version" > | 140 <param name="proteinatlas" type="select" label="Tumor tissue HPA version" > |
| 139 <options from_data_table="proteore_protein_atlas_tumor_tissue"/> | 141 <options from_data_table="proteore_protein_atlas_tumor_tissue"> |
| 142 <filter type="sort_by" column="0"/> | |
| 143 </options> | |
| 140 </param> | 144 </param> |
| 141 <param name="cancer_tissue" type="select" label="Select cancer tissue(s)" multiple="True" display="checkboxes" optional="False"> | 145 <param name="cancer_tissue" type="select" label="Select cancer tissue(s)" multiple="True" display="checkboxes" optional="False"> |
| 142 <option value="breast cancer" >Breast cancer</option> | 146 <option value="breast cancer" >Breast cancer</option> |
| 143 <option value="carcinoid" >Carcinoid</option> | 147 <option value="carcinoid" >Carcinoid</option> |
| 144 <option value="cervical cancer" >Cervical cancer</option> | 148 <option value="cervical cancer" >Cervical cancer</option> |