# HG changeset patch # User proteore # Date 1552383834 14400 # Node ID d5badf9de1b0fcbac9729b9ae8ddb714ea284881 # Parent 77db6c42a212c1870dc1c0bce9d3b123b1acaa46 planemo upload commit 968cd5b4f78f0a1da86fc3bc29f8159f86e199aa-dirty diff -r 77db6c42a212 -r d5badf9de1b0 data_manager/resource_building.py --- a/data_manager/resource_building.py Mon Mar 11 04:37:01 2019 -0400 +++ b/data_manager/resource_building.py Tue Mar 12 05:43:54 2019 -0400 @@ -494,7 +494,7 @@ # 5. nextprot (add protein features) ####################################################################################################### -def Build_nextprot_ref_file(target_directory): +def Build_nextprot_ref_file(data_manager_dict,target_directory): nextprot_ids_file = "nextprot_ac_list_all.txt" ids = id_list_from_nextprot_ftp(nextprot_ids_file,target_directory) @@ -635,7 +635,7 @@ except NameError: database=None if database is not None : - Build_nextprot_ref_file(target_directory) + Build_nextprot_ref_file(data_manager_dict,target_directory) #save info to json file filename = args.output diff -r 77db6c42a212 -r d5badf9de1b0 data_manager/resource_building.xml --- a/data_manager/resource_building.xml Mon Mar 11 04:37:01 2019 -0400 +++ b/data_manager/resource_building.xml Tue Mar 12 05:43:54 2019 -0400 @@ -1,4 +1,4 @@ - + to create or update reference files for proteore tools