# HG changeset patch # User proteore # Date 1578480764 0 # Node ID 807ecb8c386774a29b75a13436a84c5f83e5bcdb # Parent b18cb0d119712a640b86643b9d5cd27efd5852e8 "planemo upload commit ba867b8fa3352695fbda1ae764407f363ee79a50-dirty" diff -r b18cb0d11971 -r 807ecb8c3867 data_manager/resource_building.py --- a/data_manager/resource_building.py Wed Jan 08 10:34:07 2020 +0000 +++ b/data_manager/resource_building.py Wed Jan 08 10:52:44 2020 +0000 @@ -137,7 +137,7 @@ species_dict = { "Human" : "HUMAN_9606", "Mouse" : "MOUSE_10090", "Rat" : "RAT_10116" } files=["idmapping_selected.tab.gz","idmapping.dat.gz"] archive = os.path.join(tool_data_path, "id_mapping/ID_mapping_archive_"+species+"_"+str(time.strftime("%Y%m%d"))) - if os.path.isfile is False : os.mkdir(archive) + if os.path.isfile(archive) is False : os.mkdir(archive) #header if human : tab = [["UniProt-AC","UniProt-AC_reviewed","UniProt-ID","GeneID","RefSeq","GI","PDB","GO","PIR","MIM","UniGene","Ensembl_Gene","Ensembl_Transcript","Ensembl_Protein","neXtProt","BioGrid","STRING","KEGG",'Gene_Name']] diff -r b18cb0d11971 -r 807ecb8c3867 data_manager/resource_building.xml --- a/data_manager/resource_building.xml Wed Jan 08 10:34:07 2020 +0000 +++ b/data_manager/resource_building.xml Wed Jan 08 10:52:44 2020 +0000 @@ -1,4 +1,4 @@ - + to create or update reference files for proteore tools