Mercurial > repos > proteore > proteore_data_manager
view data_manager_conf.xml @ 2:2e34ee6d2d37 draft
planemo upload commit 4dd1a2f7d196a1d2e70fab379a2c08367da0fe94-dirty
| author | proteore |
|---|---|
| date | Wed, 06 Mar 2019 08:57:43 -0500 |
| parents | 0915249b8c4b |
| children | 18d3b1ea7a18 |
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<?xml version="1.0"?> <data_managers> <data_manager tool_file="data_manager/resource_building.xml" id="resource_building"> <data_table name="proteore_protein_atlas_normal_tissue"> <output> <column name="id"/> <column name="name" /> <column name="tissue" /> <column name="value" output_ref="output" > <move type="file"> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_protein_atlas_tumor_tissue"> <output> <column name="id"/> <column name="name" /> <column name="tissue" /> <column name="value" output_ref="output" > <move type="file"> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_peptide_atlas"> <output> <column name="id"/> <column name="name" /> <column name="tissue" /> <column name="value" output_ref="output" > <move type="file"> <!--source>${path}/${value}.tsv</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">peptide_atlas/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${id}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_id_mapping_Human"> <output> <column name="id" /> <column name="name" /> <column name="value" /> <column name="path" output_ref="output" > <move type="file"> <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_id_mapping_Mouse"> <output> <column name="id" /> <column name="name" /> <column name="value" /> <column name="path" output_ref="output" > <move type="file"> <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_id_mapping_Rat"> <output> <column name="id" /> <column name="name" /> <column name="value" /> <column name="path" output_ref="output" > <move type="file"> <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_biogrid_dictionaries"> <output> <column name="id" /> <column name="name" /> <column name="species" /> <column name="value" output_ref="output" > <move type="file"> <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_bioplex_dictionaries"> <output> <column name="id" /> <column name="name" /> <column name="species" /> <column name="value" output_ref="output" > <move type="file"> <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_humap_dictionaries"> <output> <column name="id" /> <column name="name" /> <column name="species" /> <column name="value" output_ref="output" > <move type="file"> <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> </data_manager> </data_managers>
