Mercurial > repos > proteore > proteore_data_manager

diff data_manager/resource_building.py @ 8:d5badf9de1b0 draft

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planemo upload commit 968cd5b4f78f0a1da86fc3bc29f8159f86e199aa-dirty
author proteore
date Tue, 12 Mar 2019 05:43:54 -0400
parents f281a1eb83d6
children cdd29444e0af
line wrap: on
line diff
--- a/data_manager/resource_building.py	Mon Mar 11 04:37:01 2019 -0400
+++ b/data_manager/resource_building.py	Tue Mar 12 05:43:54 2019 -0400
@@ -494,7 +494,7 @@
 # 5. nextprot (add protein features)
 #######################################################################################################
 
-def Build_nextprot_ref_file(target_directory):
+def Build_nextprot_ref_file(data_manager_dict,target_directory):
     nextprot_ids_file = "nextprot_ac_list_all.txt"
     ids = id_list_from_nextprot_ftp(nextprot_ids_file,target_directory)
 
@@ -635,7 +635,7 @@
     except NameError:
         database=None
     if database is not None :
-        Build_nextprot_ref_file(target_directory)
+        Build_nextprot_ref_file(data_manager_dict,target_directory)
 
     #save info to json file
     filename = args.output