Mercurial > repos > proteore > proteore_data_manager
diff data_manager_conf.xml @ 26:bf6940ff60a8 draft
planemo upload commit 0290724216a2c445b4e28842153b84a1b28f4e9a-dirty
| author | proteore |
|---|---|
| date | Thu, 16 May 2019 07:29:01 -0400 |
| parents | 6e36dd9abcb5 |
| children | e09edc8b1c90 |
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--- a/data_manager_conf.xml Fri May 10 04:50:22 2019 -0400 +++ b/data_manager_conf.xml Thu May 16 07:29:01 2019 -0400 @@ -19,13 +19,14 @@ <data_table name="proteore_protein_atlas_normal_tissue"> <output> <column name="id"/> + <column name="release"/> <column name="name" /> <column name="tissue" /> <column name="value" output_ref="output" > <move type="file"> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${release}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> @@ -33,13 +34,14 @@ <data_table name="proteore_protein_atlas_tumor_tissue"> <output> <column name="id"/> + <column name="release"/> <column name="name" /> <column name="tissue" /> <column name="value" output_ref="output" > <move type="file"> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${release}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> @@ -95,6 +97,7 @@ <data_table name="proteore_biogrid_dictionaries"> <output> <column name="id" /> + <column name="release"/> <column name="name" /> <column name="species" /> <column name="value" output_ref="output" > @@ -102,7 +105,7 @@ <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${release}.json</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> @@ -110,6 +113,7 @@ <data_table name="proteore_bioplex_dictionaries"> <output> <column name="id" /> + <column name="release"/> <column name="name" /> <column name="species" /> <column name="value" output_ref="output" > @@ -117,7 +121,7 @@ <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${release}.json</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> @@ -125,6 +129,7 @@ <data_table name="proteore_humap_dictionaries"> <output> <column name="id" /> + <column name="release"/> <column name="name" /> <column name="species" /> <column name="value" output_ref="output" > @@ -132,7 +137,7 @@ <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${release}.json</value_translation> <value_translation type="function">abspath</value_translation> </column> </output>