Mercurial > repos > proteore > proteore_data_manager

diff data_manager_conf.xml @ 1:0915249b8c4b draft

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planemo upload commit 4dd1a2f7d196a1d2e70fab379a2c08367da0fe94-dirty
author proteore
date Wed, 06 Mar 2019 08:53:06 -0500
parents 0a26460d7366
children 18d3b1ea7a18
line wrap: on
line diff
--- a/data_manager_conf.xml	Mon Mar 04 05:03:04 2019 -0500
+++ b/data_manager_conf.xml	Wed Mar 06 08:53:06 2019 -0500
@@ -1,7 +1,21 @@
 <?xml version="1.0"?>
 <data_managers>
     <data_manager tool_file="data_manager/resource_building.xml" id="resource_building">
-        <data_table name="proteore_protein_atlas">
+        <data_table name="proteore_protein_atlas_normal_tissue">
+            <output>
+                <column name="id"/>
+                <column name="name" />
+                <column name="tissue" />
+                <column name="value" output_ref="output" >
+                    <move type="file">
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
+        <data_table name="proteore_protein_atlas_tumor_tissue">
             <output>
                 <column name="id"/>
                 <column name="name" />
@@ -30,7 +44,37 @@
                 </column>
             </output>
         </data_table>
-        <data_table name="proteore_id_mapping">
+        <data_table name="proteore_id_mapping_Human">
+            <output>
+                <column name="id" />
+                <column name="name" />
+                <column name="value" />
+                <column name="path" output_ref="output" >
+                    <move type="file">
+                        <!--source>${path}</source-->
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
+        <data_table name="proteore_id_mapping_Mouse">
+            <output>
+                <column name="id" />
+                <column name="name" />
+                <column name="value" />
+                <column name="path" output_ref="output" >
+                    <move type="file">
+                        <!--source>${path}</source-->
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
+        <data_table name="proteore_id_mapping_Rat">
             <output>
                 <column name="id" />
                 <column name="name" />