Mercurial > repos > proteore > proteore_data_manager

comparison data_manager/resource_building.xml @ 6:f281a1eb83d6 draft

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planemo upload commit 5df487b88ce2146c4be8e1d9f419006583185f6a-dirty
author proteore
date Mon, 11 Mar 2019 04:30:28 -0400
parents 429e7481c392
children 77db6c42a212
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5:429e7481c392 6:f281a1eb83d6
1 <tool id="data_manager_proteore" name="Get source files for proteore tools" version="2019.03.08.1" tool_type="manage_data"> 1 <tool id="data_manager_proteore" name="Get source files for proteore tools" version="2019.03.10" tool_type="manage_data">
2 <description> 2 <description>
3 to create or update reference files for proteore tools 3 to create or update reference files for proteore tools
4 </description> 4 </description>
5 <requirements> 5 <requirements>
6 <!--requirement type="package" version="1.8.2">sparqlwrapper</requirement--> 6 <!--requirement type="package" version="1.8.2">sparqlwrapper</requirement-->
21 #else if $database.database == "PPI" 21 #else if $database.database == "PPI"
22 --interactome="$database.base.interactome" 22 --interactome="$database.base.interactome"
23 #if $database.base.interactome == "biogrid" 23 #if $database.base.interactome == "biogrid"
24 --species="$database.base.species" 24 --species="$database.base.species"
25 #end if 25 #end if
26 #else if $database.database == "nextprot"
27 --database=$database.database
26 #end if 28 #end if
27 --output "$output" 29 --output "$output"
28 30
29 ]]></command> 31 ]]></command>
30 32
33 <param name="database" type="select"> 35 <param name="database" type="select">
34 <option value="human_protein_atlas">Human Protein Atlas</option> 36 <option value="human_protein_atlas">Human Protein Atlas</option>
35 <option value="peptide_atlas">Peptide Atlas</option> 37 <option value="peptide_atlas">Peptide Atlas</option>
36 <option value="id_mapping">ID mapping</option> 38 <option value="id_mapping">ID mapping</option>
37 <option value="PPI">Build protein interaction maps</option> 39 <option value="PPI">Build protein interaction maps</option>
40 <option value="nextprot">neXtProt</option>
38 </param> 41 </param>
39 <when value="human_protein_atlas"> 42 <when value="human_protein_atlas">
40 <param name="tissues" type="select" multiple="false" label="Please select tissue"> 43 <param name="tissues" type="select" multiple="false" label="Please select tissue">
41 <option value="HPA_normal_tissue">Normal tissue</option> 44 <option value="HPA_normal_tissue">Normal tissue</option>
42 <option value="HPA_pathology">Pathology</option> 45 <option value="HPA_pathology">Pathology</option>