Mercurial > repos > proteore > proteore_data_manager

comparison data_manager/resource_building.py @ 33:e681d7de4f5e draft

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"planemo upload commit ba867b8fa3352695fbda1ae764407f363ee79a50-dirty"
author proteore
date Wed, 08 Jan 2020 10:08:11 +0000
parents ec1febc6672e
children 06b3181206b4
comparison
equal deleted inserted replaced
32:ec1febc6672e 33:e681d7de4f5e
648 except NameError: 648 except NameError:
649 id_mapping = None 649 id_mapping = None
650 if id_mapping is not None: 650 if id_mapping is not None:
651 id_mapping = id_mapping .split(",") 651 id_mapping = id_mapping .split(",")
652 for species in id_mapping : 652 for species in id_mapping :
653 id_mapping_sources(data_manager_dict, species, target_directory, args.tool_data_path)) 653 id_mapping_sources(data_manager_dict, species, target_directory, args.tool_data_path)
654 654
655 ## Download PPI ref files from biogrid/bioplex/humap 655 ## Download PPI ref files from biogrid/bioplex/humap
656 try: 656 try:
657 interactome=args.interactome 657 interactome=args.interactome
658 if interactome == "biogrid" : 658 if interactome == "biogrid" :