Mercurial > repos > proteore > proteore_data_manager

comparison data_manager/resource_building.py @ 29:9a40b72414de draft

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planemo upload commit 3c02acc07df862410ce979ce63e3d14f10edc50f-dirty
author proteore
date Thu, 13 Jun 2019 10:21:25 -0400
parents 808c8493ed4f
children a6cabd3ab71f
comparison
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28:808c8493ed4f 29:9a40b72414de
162 uniprot_reviewed_list = decoded_content.splitlines() 162 uniprot_reviewed_list = decoded_content.splitlines()
163 163
164 for line in tab[1:]: 164 for line in tab[1:]:
165 UniProtAC = line[0] 165 UniProtAC = line[0]
166 if UniProtAC not in uniprot_reviewed_list : 166 if UniProtAC not in uniprot_reviewed_list :
167 line[0]="NA" 167 line[0]=""
168 line[1]=""
168 169
169 """ 170 """
170 Supplementary ID to get from HUMAN_9606_idmapping.dat : 171 Supplementary ID to get from HUMAN_9606_idmapping.dat :
171 -NextProt,BioGrid,STRING,KEGG 172 -NextProt,BioGrid,STRING,KEGG
172 """ 173 """