Mercurial > repos > proteore > proteore_data_manager
comparison data_manager/resource_building.py @ 24:6cbb76823b7b draft
planemo upload commit 3e8aad84b7fe9218370364b1aef3ea5779475f9f-dirty
| author | proteore |
|---|---|
| date | Fri, 10 May 2019 04:22:00 -0400 |
| parents | ebdd4961c6c2 |
| children | bf6940ff60a8 |
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| 23:ebdd4961c6c2 | 24:6cbb76823b7b |
|---|---|
| 570 tm_domains = data['entry']['annotationsByCategory']["transmembrane-region"] | 570 tm_domains = data['entry']['annotationsByCategory']["transmembrane-region"] |
| 571 all_tm_domains = set() | 571 all_tm_domains = set() |
| 572 for tm in tm_domains : | 572 for tm in tm_domains : |
| 573 all_tm_domains.add(tm['cvTermName']) | 573 all_tm_domains.add(tm['cvTermName']) |
| 574 nb_domains+=1 | 574 nb_domains+=1 |
| 575 # print "nb domains ++" | 575 #print "nb domains ++" |
| 576 # print (nb_domains) | 576 #print (nb_domains) |
| 577 nextprot_file[:] = [] | 577 nextprot_file[:] = [] |
| 578 nextprot_file.append([id,mass_mol,str(seq_length),iso_elec_point,chr_loc,all_subcell_locs,all_diseases,str(nb_domains),protein_existence]) | 578 nextprot_file.append([id,mass_mol,str(seq_length),iso_elec_point,chr_loc,all_subcell_locs,all_diseases,str(nb_domains),protein_existence]) |
| 579 writer.writerows(nextprot_file) | 579 writer.writerows(nextprot_file) |
| 580 | 580 |
| 581 data_table_entry = dict(id=release_id, name = name, value = path) | 581 id = str(10000000000 - int(time.strftime("%Y%m%d"))) |
| 582 | |
| 583 data_table_entry = dict(id=id, release=release_id, name = name, value = path) | |
| 582 _add_data_table_entry(data_manager_dict, data_table_entry, "proteore_nextprot_ref") | 584 _add_data_table_entry(data_manager_dict, data_table_entry, "proteore_nextprot_ref") |
| 583 | 585 |
| 584 ####################################################################################################### | 586 ####################################################################################################### |
| 585 # Main function | 587 # Main function |
| 586 ####################################################################################################### | 588 ####################################################################################################### |