Mercurial > repos > proteore > proteore_data_manager

comparison data_manager/resource_building.py @ 15:5f39d3ef5fe3 draft

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planemo upload commit 45108c8cbeeccab12031bbf6e65f1177222d4e10
author proteore
date Wed, 17 Apr 2019 10:33:31 -0400
parents 3f9ba522bfe8
children f75c525e0a4a
comparison
equal deleted inserted replaced
14:3f9ba522bfe8 15:5f39d3ef5fe3
560 for tm in tm_domains : 560 for tm in tm_domains :
561 all_tm_domains.add(tm['cvTermName']) 561 all_tm_domains.add(tm['cvTermName'])
562 nb_domains+=1 562 nb_domains+=1
563 # print "nb domains ++" 563 # print "nb domains ++"
564 # print (nb_domains) 564 # print (nb_domains)
565 nextprot_file.clear() 565 nextprot_file[:] = []
566 nextprot_file.append([id,mass_mol,str(seq_length),iso_elec_point,chr_loc,all_subcell_locs,all_diseases,str(nb_domains),protein_existence]) 566 nextprot_file.append([id,mass_mol,str(seq_length),iso_elec_point,chr_loc,all_subcell_locs,all_diseases,str(nb_domains),protein_existence])
567 writer.writerows(nextprot_file) 567 writer.writerows(nextprot_file)
568 568
569 data_table_entry = dict(id=id, name = name, value = path) 569 data_table_entry = dict(id=id, name = name, value = path)
570 _add_data_table_entry(data_manager_dict, data_table_entry, "proteore_nextprot_ref") 570 _add_data_table_entry(data_manager_dict, data_table_entry, "proteore_nextprot_ref")