Mercurial > repos > proteore > proteore_data_manager

comparison data_manager/resource_building.py @ 45:488e015576bc draft

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"planemo upload commit ba867b8fa3352695fbda1ae764407f363ee79a50-dirty"
author proteore
date Wed, 08 Jan 2020 15:15:16 +0000
parents 7ebbf851598e
children 09d9fd9b2d8c
comparison
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44:7ebbf851598e 45:488e015576bc
236 if os.path.exists(os.path.join(archive,nextprot_path.split("/")[-1])) : os.remove(os.path.join(archive,nextprot_path.split("/")[-1])) 236 if os.path.exists(os.path.join(archive,nextprot_path.split("/")[-1])) : os.remove(os.path.join(archive,nextprot_path.split("/")[-1]))
237 shutil.move(nextprot_path,archive) 237 shutil.move(nextprot_path,archive)
238 next_dict = {} 238 next_dict = {}
239 for nextid in nextprot_ids : 239 for nextid in nextprot_ids :
240 next_dict[nextid.replace("NX_","")] = nextid 240 next_dict[nextid.replace("NX_","")] = nextid
241 os.remove(os.path.join(target_directory,"nextprot_ac_list_all.txt")) 241 #os.remove(os.path.join(target_directory,"nextprot_ac_list_all.txt"))
242 242
243 #add missing nextprot ID 243 #add missing nextprot ID
244 for line in tab[1:] : 244 for line in tab[1:] :
245 uniprotID=line[0] 245 uniprotID=line[0]
246 nextprotID=line[14] 246 nextprotID=line[14]