Mercurial > repos > proteore > proteore_data_manager

comparison data_manager/resource_building.py @ 39:45dc32d0afa0 draft

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"planemo upload commit ba867b8fa3352695fbda1ae764407f363ee79a50-dirty"
author proteore
date Wed, 08 Jan 2020 13:11:36 +0000
parents 6daab0a711e2
children a7bcc9a0a456
comparison
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38:6daab0a711e2 39:45dc32d0afa0
165 #save reviewed list 165 #save reviewed list
166 reviewed_list_path = os.path.join(archive,'uniprot_reviewed_list.txt') 166 reviewed_list_path = os.path.join(archive,'uniprot_reviewed_list.txt')
167 with open(reviewed_list_path,'w') as reviewed_list_file: 167 with open(reviewed_list_path,'w') as reviewed_list_file:
168 for id in uniprot_reviewed_list: 168 for id in uniprot_reviewed_list:
169 reviewed_list_file.write(id+"\n") 169 reviewed_list_file.write(id+"\n")
170 shutil.move(reviewed_list_path, archive)
171 170
172 #remove unreviewed uniprot-AC 171 #remove unreviewed uniprot-AC
173 for line in tab[1:]: 172 for line in tab[1:]:
174 UniProtAC = line[1] 173 UniProtAC = line[1]
175 if UniProtAC not in uniprot_reviewed_list : 174 if UniProtAC not in uniprot_reviewed_list :