Mercurial > repos > proteore > proteore_data_manager

comparison data_manager_conf.xml @ 21:026177e4ff4b draft

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planemo upload commit e05ccbf13c33b97ab441e2f8bc4b5bc746a378df-dirty
author proteore
date Tue, 07 May 2019 10:17:48 -0400
parents e6b8f0e5fe16
children 6cbb76823b7b
comparison
equal deleted inserted replaced
20:29cf75c83618 21:026177e4ff4b
45 </output> 45 </output>
46 </data_table> 46 </data_table>
47 <data_table name="proteore_id_mapping_Human"> 47 <data_table name="proteore_id_mapping_Human">
48 <output> 48 <output>
49 <column name="id" /> 49 <column name="id" />
50 <column name="release"/>
50 <column name="name" /> 51 <column name="name" />
51 <column name="species" /> 52 <column name="species" />
52 <column name="value" output_ref="output" > 53 <column name="value" output_ref="output" >
53 <move type="file"> 54 <move type="file">
54 <!--source>${path}</source--> 55 <!--source>${path}</source-->
55 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target> 56 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target>
56 </move> 57 </move>
57 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation> 58 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${release}.tsv</value_translation>
58 <value_translation type="function">abspath</value_translation> 59 <value_translation type="function">abspath</value_translation>
59 </column> 60 </column>
60 </output> 61 </output>
61 </data_table> 62 </data_table>
62 <data_table name="proteore_id_mapping_Mouse"> 63 <data_table name="proteore_id_mapping_Mouse">
63 <output> 64 <output>
64 <column name="id" /> 65 <column name="id" />
66 <column name="release"/>
65 <column name="name" /> 67 <column name="name" />
66 <column name="species" /> 68 <column name="species" />
67 <column name="value" output_ref="output" > 69 <column name="value" output_ref="output" >
68 <move type="file"> 70 <move type="file">
69 <!--source>${path}</source--> 71 <!--source>${path}</source-->
70 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target> 72 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target>
71 </move> 73 </move>
72 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation> 74 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${release}.tsv</value_translation>
73 <value_translation type="function">abspath</value_translation> 75 <value_translation type="function">abspath</value_translation>
74 </column> 76 </column>
75 </output> 77 </output>
76 </data_table> 78 </data_table>
77 <data_table name="proteore_id_mapping_Rat"> 79 <data_table name="proteore_id_mapping_Rat">
78 <output> 80 <output>
79 <column name="id" /> 81 <column name="id" />
82 <column name="release"/>
80 <column name="name" /> 83 <column name="name" />
81 <column name="species" /> 84 <column name="species" />
82 <column name="value" output_ref="output" > 85 <column name="value" output_ref="output" >
83 <move type="file"> 86 <move type="file">
84 <!--source>${path}</source--> 87 <!--source>${path}</source-->
85 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target> 88 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target>
86 </move> 89 </move>
87 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation> 90 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${release}.tsv</value_translation>
88 <value_translation type="function">abspath</value_translation> 91 <value_translation type="function">abspath</value_translation>
89 </column> 92 </column>
90 </output> 93 </output>
91 </data_table> 94 </data_table>
92 <data_table name="proteore_biogrid_dictionaries"> 95 <data_table name="proteore_biogrid_dictionaries">