# HG changeset patch
# User proteore
# Date 1559569578 14400
# Node ID f078633d9669cdbcd78e6f2b2b06025beaa25c7b
# Parent  4b29214f2d4c5b1086d06fe2104c704929495e01
planemo upload commit a172073d58a2fc713af8656d3bcfa28592dcc242-dirty

diff -r 4b29214f2d4c -r f078633d9669 GO-enrich.R
--- a/GO-enrich.R	Tue May 14 09:36:23 2019 -0400
+++ b/GO-enrich.R	Mon Jun 03 09:46:18 2019 -0400
@@ -1,5 +1,5 @@
 options(warn=-1)  #TURN OFF WARNINGS !!!!!!
-suppressMessages(library(clusterProfiler,quietly = TRUE))
+#suppressMessages(library(clusterProfiler,quietly = TRUE))
 
 # Read file and return file content as data.frame
 read_file <- function(path,header){
diff -r 4b29214f2d4c -r f078633d9669 README.rst
--- a/README.rst	Tue May 14 09:36:23 2019 -0400
+++ b/README.rst	Mon Jun 03 09:46:18 2019 -0400
@@ -40,6 +40,13 @@
 
 Text (tables) and graphics representing the repartition and/or enrichment of GO categories. 
 
+**Packages used** 
+    - bioconductor-org.hs.eg.db v3.5.0
+    - bioconductor-org.mm.eg.db v3.5.0
+    - bioconductor-org.rn.eg.db v3.5.0
+    - dose v3.2.0
+    - clusterpofiler v 3.4.4
+
 **User manual / Documentation** of the clusterProfiler R package (functions and parameters):
 https://bioconductor.org/packages/3.7/bioc/vignettes/clusterProfiler/inst/doc/clusterProfiler.html
 (Very well explained)
\ No newline at end of file
diff -r 4b29214f2d4c -r f078633d9669 cluster_profiler.xml
--- a/cluster_profiler.xml	Tue May 14 09:36:23 2019 -0400
+++ b/cluster_profiler.xml	Mon Jun 03 09:46:18 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="cluter_profiler" name="GO terms classification and enrichment analysis" version="2019.05.14">
+<tool id="cluter_profiler" name="GO terms classification and enrichment analysis" version="2019.06.01">
     <description>(Human, Mouse, Rat)[clusterProfiler]</description>
     <requirements>
         <requirement type="package" version="3.4.1">R</requirement>
@@ -282,6 +282,15 @@
 
 .. class:: infomark
 
+Packages used: 
+    - bioconductor-org.hs.eg.db v3.5.0
+    - bioconductor-org.mm.eg.db v3.5.0
+    - bioconductor-org.rn.eg.db v3.5.0
+    - dose v3.2.0
+    - clusterpofiler v 3.4.4
+
+.. class:: infomark
+
 **Galaxy integration**
 
 T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck - CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR