# HG changeset patch
# User proteore
# Date 1536154497 14400
# Node ID 67a796154e2a35b4c9cbe919de2c17dfd8e4309c
# Parent  1c98865a8508f86af08877f22b45362879dcf024
planemo upload commit 07fb0efd8a1badeb395fa1dc435037998b4de25f

diff -r 1c98865a8508 -r 67a796154e2a GO-enrich.R
--- a/GO-enrich.R	Wed Sep 05 03:50:36 2018 -0400
+++ b/GO-enrich.R	Wed Sep 05 09:34:57 2018 -0400
@@ -41,6 +41,7 @@
   ego<-enrichGO(gene=geneid,
                 universe=universe,
                 OrgDb=orgdb,
+                keytype="ENTREZID",
                 ont=ontology,
                 pAdjustMethod="BH",
                 pvalueCutoff=pval_cutoff,
diff -r 1c98865a8508 -r 67a796154e2a cluster_profiler.xml
--- a/cluster_profiler.xml	Wed Sep 05 03:50:36 2018 -0400
+++ b/cluster_profiler.xml	Wed Sep 05 09:34:57 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="cluter_profiler" name="clusterProfiler" version="2018.09.04">
+<tool id="cluter_profiler" name="clusterProfiler" version="2018.09.05">
     <description>
     GO terms classification and enrichment analysis
     </description>
@@ -7,7 +7,7 @@
         <requirement type="package" version="3.5.0">bioconductor-org.hs.eg.db</requirement>
         <requirement type="package" version="3.5.0">bioconductor-org.mm.eg.db</requirement>
         <requirement type="package" version="3.2.0">bioconductor-dose</requirement>
-        <requirement type="package" version="3.6.0">bioconductor-clusterprofiler</requirement>
+        <requirement type="package" version="3.4.4">bioconductor-clusterprofiler</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         Rscript "$__tool_directory__/GO-enrich.R"