Mercurial > repos > proteore > proteore_clusterprofiler

diff GO-enrich.R @ 27:54f8e6f5c59d draft

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planemo upload commit d884b75cfc292105807c42c58f864d536dc9e431-dirty
author proteore
date Wed, 21 Nov 2018 08:53:49 -0500
parents c8bff18c102b
children eafb37258a6f
line wrap: on
line diff
--- a/GO-enrich.R	Wed Nov 21 08:22:13 2018 -0500
+++ b/GO-enrich.R	Wed Nov 21 08:53:49 2018 -0500
@@ -60,6 +60,7 @@
     p <- barplot(ggo, showCategory=10)
     print(p)
     dev.off()
+    ggo <- as.data.frame(ggo)
     return(ggo)
   }
 }
@@ -99,6 +100,7 @@
     dev.off()
     
     }
+    ego <- as.data.frame(ego)
     return(ego)
   } else {
     warning(paste("No Go terms enriched (EGO) found for ",ontology,"ontology"),immediate. = TRUE,noBreaks. = TRUE,call. = FALSE)