--- a/cluster_profiler.xml	Mon Sep 17 10:30:30 2018 -0400
+++ b/cluster_profiler.xml	Tue Sep 18 08:25:17 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="cluter_profiler" name="clusterProfiler" version="2018.09.17">
+<tool id="cluter_profiler" name="clusterProfiler" version="2018.09.18">
     <description>
     GO terms classification and enrichment analysis
     </description>
@@ -183,18 +183,43 @@
             <conditional name="idti">
                 <param name="idtypein" value="Uniprot"/>
             </conditional>
-            <param name="species" value="human"/>
+            <param name="species" value="org.Hs.eg.db"/>
             <conditional name="ggo">
                 <param name="go_represent" value="true"/>
                 <param name="level" value="3"/>
             </conditional>
             <conditional name="ego">
-                <param name="go_enrich" value="false"/>
+                <param name="go_enrich" value="true"/>
+                 <conditional name="universe_input">
+                    <param name="universe_ids" value="file"/>
+                    <param name="file" value="background_ids.txt"/>
+                    <param name="header" value="true"/>
+                    <param name="ncol" value="c7"/>
+                 </conditional>
+                 <conditional name="universe_idti" >
+                    <param name="universe_idtypein" value="Uniprot"/>
+                 </conditional>
             </conditional>
-            <param name="ontology" value="CC"/>
-            <output name="log" />
+            <param name="ontology" value="CC,BP,MF"/>
+            <param name="plot" value="dotplot,barplot"/>
+            <output name="log" file="log.txt" />
             <output_collection name="text_output">
-                <element name="GGO.CC.png" file="GGO.CC.png" ftype="png"/>
+                <element name="cluster_profiler_GGO_CC.csv" file="cluster_profiler_GGO_CC.csv" ftype="csv"/>
+                <element name="cluster_profiler_EGO_BP.csv" file="cluster_profiler_GGO_BP.csv" ftype="csv"/>
+                <element name="cluster_profiler_GGO_MF.csv" file="cluster_profiler_GGO_MF.csv" ftype="csv"/>
+                <element name="cluster_profiler_EGO_CC.csv" file="cluster_profiler_EGO_CC.csv" ftype="csv"/>
+                <element name="cluster_profiler_EGO_BP.csv" file="cluster_profiler_EGO_BP.csv" ftype="csv"/>
+                <element name="cluster_profiler_EGO_MF.csv" file="cluster_profiler_EGO_MF.csv" ftype="csv"/>
+
+            </output_collection>
+            <output_collection name="graph_output">
+                <element name="GGO_CC_bar-plot" file="GGO_CC_bar-plot" ftype="png" diff="size"/>
+                <element name="GGO_BP_bar-plot" file="GGO_BP_bar-plot" ftype="png" diff="size"/>
+                <element name="GGO_MF_bar-plot" file="GGO_MF_bar-plot" ftype="png" diff="size"/>
+                <element name="EGO_CC_bar-plot" file="EGO_CC_bar-plot" ftype="png" diff="size"/>
+                <element name="EGO_BP_bar-plot" file="EGO_BP_bar-plot" ftype="png" diff="size"/>
+                <element name="EGO_CC_dot-plot" file="EGO_CC_dot-plot" ftype="png" diff="size"/>
+                <element name="EGO_BP_dot-plot" file="EGO_BP_dot-plot" ftype="png" diff="size"/>
             </output_collection>
         </test>
     </tests>