diff cluster_profiler.xml @ 2:1c98865a8508 draft

planemo upload commit 01102a33a5c3fc56de61cd12784691b49334054b-dirty
author proteore
date Wed, 05 Sep 2018 03:50:36 -0400
parents 91b9b48d07b3
children 67a796154e2a
line wrap: on
line diff
--- a/cluster_profiler.xml	Tue Aug 28 09:09:10 2018 -0400
+++ b/cluster_profiler.xml	Wed Sep 05 03:50:36 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="cluter_profiler" name="clusterProfiler" version="2018.08.28">
+<tool id="cluter_profiler" name="clusterProfiler" version="2018.09.04">
     <description>
     GO terms classification and enrichment analysis
     </description>
@@ -7,7 +7,7 @@
         <requirement type="package" version="3.5.0">bioconductor-org.hs.eg.db</requirement>
         <requirement type="package" version="3.5.0">bioconductor-org.mm.eg.db</requirement>
         <requirement type="package" version="3.2.0">bioconductor-dose</requirement>
-        <requirement type="package" version="3.4.4">bioconductor-clusterprofiler</requirement>
+        <requirement type="package" version="3.6.0">bioconductor-clusterprofiler</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         Rscript "$__tool_directory__/GO-enrich.R"
@@ -90,9 +90,9 @@
         </conditional>
             
         <param name="species" type="select" label="Select a species" >
-            <option value="human">Human</option>
-            <option value="mouse">Mouse</option>
-            <option value="rat">Rat</option>
+            <option value="org.Hs.eg.db">Human</option>
+            <option value="org.Mm.eg.db">Mouse</option>
+            <!--option value="org.Sc.eg.db">Rat</option-->
         </param>
         <conditional name="ggo">
             <param name="go_represent" type="boolean" checked="true" truevalue="true" falsevalue="false" label="Do you want to perform GO categories representation analysis?"/>