Mercurial > repos > proteore > proteore_build_protein_interaction_maps

changeset 8:f4aad88b683f draft default tip

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planemo upload commit fb27a6b5de5cd7b269a41be3c85c593b77aa1b18-dirty
author proteore
date Thu, 27 Jun 2019 04:03:02 -0400
parents 845d6630d2c2
children
files build_protein_interaction_maps.xml
diffstat 1 files changed, 11 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/build_protein_interaction_maps.xml	Fri May 24 04:01:27 2019 -0400
+++ b/build_protein_interaction_maps.xml	Thu Jun 27 04:03:02 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="build_protein_interaction_maps" name="Build Protein-Protein interaction network" version="2019.05.24">
+<tool id="build_protein_interaction_maps" name="Build Protein-Protein interaction network" version="2019.06.27">
 <description>[BioGRID, BioPlex, HuMAP]</description>
     <requirements>
     </requirements>
@@ -207,6 +207,10 @@
 
 "Enter IDs": A list of IDs must be entered either via a copy/paste or by choosing a file. The type of identifiers allowed depends on the public resource you select (see below).  
 
+.. class:: warningmark
+	
+In copy/paste mode, the number of IDs considered in input is limited to 5000.
+
 -----
 
 **Parameters**
@@ -262,13 +266,17 @@
 .. class:: infomark
 
 **Data source (release date)**
+
 This tool uses the following public ressources:
 
 - **BioGRID**:
 
 The release 3.5.167 was compiled on Nov. 25rd, 2018 and contains all curated interaction data processed prior to this date. Source files are: 
+
 BIOGRID-ORGANISM-Homo_sapiens-3.5.167.tab2.txt
+
 BIOGRID-ORGANISM-Mus_musculus-3.5.167.tab2.txt
+
 BIOGRID-ORGANISM-Rattus_norvegicus-3.5.167.tab2.txt
 
 - **Bioplex**: Version 2.0 
@@ -278,6 +286,7 @@
 - **Human protein complex Map (Hu.map)**:
 
 nodeTable.txt: http://proteincomplexes.org/static/downloads/nodeTable.txt
+
 pairsWprob: http://proteincomplexes.org/static/downloads/pairsWprob.txt
 
 Mapping files linking the source database identifier (Entrez gene ID and Uniprot Accession Number) to the Reactome pathways are based on 2018-12-07 version, NCBI2Reactome.txt and UniProt2Reactome.txt (from https://www.reactome.org/download-data).
@@ -294,7 +303,7 @@
 
 This work has been partially funded through the French National Agency for Research (ANR) IFB project.
 
-Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.
+Help: contact@proteore.org for any questions or concerns about the Galaxy implementation of this tool.
     ]]></help>
     <citations>
     </citations>