Mercurial > repos > pjbriggs > trimmomatic

diff trimmomatic.xml @ 16:d300b1888cef draft

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Uploaded bugfix version 0.38.1 for testing
author pjbriggs
date Wed, 25 Mar 2020 14:43:33 +0000
parents 0fb869e9dee6
children 79f875f98770
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--- a/trimmomatic.xml	Mon Jul 08 06:35:08 2019 -0400
+++ b/trimmomatic.xml	Wed Mar 25 14:43:33 2020 +0000
@@ -1,10 +1,15 @@
-<tool id="trimmomatic" name="Trimmomatic" version="0.38.0">
+<tool id="trimmomatic" name="Trimmomatic" version="0.38.1">
   <description>flexible read trimming tool for Illumina NGS data</description>
   <macros>
     <import>trimmomatic_macros.xml</import>
   </macros>
   <requirements>
-    <requirement type="package" version="0.38">trimmomatic</requirement>
+    <requirement type="package" version="0.38">trimmomatic</requirement>            <!--
+    Coreutils required for 'readlink -e' work across platforms
+    See similar fix for snpSift
+    https://github.com/galaxyproject/tools-iuc/commit/b5e2080a7afdea9fa476895693b6115824c6fbb9
+    -->
+    <requirement type="package" version="8.25">coreutils</requirement>
   </requirements>
   <command detect_errors="aggressive"><![CDATA[
   @CONDA_TRIMMOMATIC_JAR_PATH@ &&